View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_15 (Length: 453)
Name: NF1140_low_15
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 97 - 438
Target Start/End: Complemental strand, 13145185 - 13144858
Alignment:
| Q |
97 |
atttctgccttataataattgtcacatttgatcatttaacacttaagaaaatatgnnnnnnn-atcaagaaaatatgatagtatatataaaaatatgata |
195 |
Q |
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| T |
13145185 |
atttctgccttataataattgtcacatttgatcatttaacactaaagaaaatatgttttttttatcaagaaaatatgatagtatatataaaaatatgata |
13145086 |
T |
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| Q |
196 |
attgtaatttgacgggctttccaccaaaagannnnnnnnattaaacatattattggtttcagttataatttattttttaaagcatcttcggttgtaaatt |
295 |
Q |
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| T |
13145085 |
attgtaattttac-----------caaaagattttttttattaaacatattattggtttcagttataatttattttttaaagcagcttcggttgtaaatt |
13144997 |
T |
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| Q |
296 |
gtaatgcaaatacattatgagaattggcaccctcaaaataaaagcatatatatagcaatgagaaaaatattcaaagtgaatagaaagtcaaggttccact |
395 |
Q |
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| T |
13144996 |
gtaatgcaaatacattatgagaattggcaccctcaaaataaaagca----tatagcaatgagaaaaatattcaaagtgaatagaaagtcaaggttccact |
13144901 |
T |
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| Q |
396 |
atgttcgccgccgctggatcatttccatatcccttttacagag |
438 |
Q |
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| T |
13144900 |
atggccgccgctgctggatcatttccatatcccttttacagag |
13144858 |
T |
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