View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_18 (Length: 446)
Name: NF1140_low_18
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 36408847 - 36408406
Alignment:
| Q |
1 |
tcaaccatacagtattgtttatttcttttatgtttgtaaagttttaatttcactatcatggcccaatnnnnnnnnggttccactcaaa-ttaaacacgta |
99 |
Q |
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| T |
36408847 |
tcaaccatacagtattgtttatttcttttatgtttgtaaagttttaatttcactatcatggcccaataaaaaaaaggttccactcaaaattaaacacgta |
36408748 |
T |
|
| Q |
100 |
gcatagtatattaccaacttagctatgtaagaacatgtcaaacttattgtgaatgaaggaatcagatttcattacaatggtagtgtgatcataatattga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36408747 |
gcatagtatattaccaacttagctatgtaagaacatgtcaaacttattgtgaatgaaggaatcatatttcattacaatggtagtgtgatcataatattga |
36408648 |
T |
|
| Q |
200 |
tattattgaaaaacagataagnnnnnnncttctgatagaatgagaaacagatataagttaaacaaacacgggaagtatagaaaacatactggaatgaatc |
299 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36408647 |
tattattgaaaaacagataagtttttttcttctgatagaatgagaaacagatataagttaaacaaacacaggaagtatagaaaacatactggaatgaatc |
36408548 |
T |
|
| Q |
300 |
acttcacagaattcccttagaaatttgcaaccttatactttaaacaaacttaaaaaggcacagagtgaaaatatcaatttacatttcagtgcttctttca |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36408547 |
acttcacagaattcccttagaaatttgcaaccttatactttaaacaaacttaaaaaggcacagtgtgaaaatatcaatttacatttcagtgcttctttca |
36408448 |
T |
|
| Q |
400 |
ccgccaagcttcgactcggtctgatcttgtatctgtggtgct |
441 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
36408447 |
ccgccaagcttcgactcggtctgatcttgtatctgtgctgct |
36408406 |
T |
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