View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_low_19 (Length: 432)

Name: NF1140_low_19
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_low_19
NF1140_low_19
[»] chr3 (15 HSPs)
chr3 (331-419)||(9016893-9016981)
chr3 (12-160)||(9016571-9016719)
chr3 (332-420)||(16024807-16024895)
chr3 (336-419)||(54394591-54394674)
chr3 (331-415)||(1741971-1742055)
chr3 (331-419)||(31989802-31989890)
chr3 (364-421)||(35105074-35105131)
chr3 (196-228)||(9016755-9016787)
chr3 (331-419)||(16024520-16024608)
chr3 (331-419)||(25693295-25693383)
chr3 (331-404)||(31990147-31990220)
chr3 (371-416)||(50620600-50620645)
chr3 (364-420)||(16012895-16012951)
chr3 (364-420)||(31401663-31401719)
chr3 (384-420)||(36788152-36788188)
[»] chr4 (14 HSPs)
chr4 (331-418)||(17947288-17947375)
chr4 (331-418)||(31792623-31792710)
chr4 (337-415)||(40154646-40154723)
chr4 (331-417)||(51203221-51203307)
chr4 (339-416)||(36620916-36620993)
chr4 (339-415)||(15186857-15186933)
chr4 (342-417)||(2478935-2479010)
chr4 (334-420)||(41823536-41823622)
chr4 (364-421)||(13427847-13427904)
chr4 (352-416)||(5521526-5521590)
chr4 (331-415)||(11692153-11692237)
chr4 (364-416)||(19306075-19306127)
chr4 (363-419)||(22008398-22008454)
chr4 (364-420)||(25368525-25368581)
[»] chr8 (11 HSPs)
chr8 (331-418)||(158703-158790)
chr8 (331-417)||(15249584-15249670)
chr8 (331-420)||(23757284-23757373)
chr8 (331-395)||(14046482-14046545)
chr8 (334-417)||(22210238-22210321)
chr8 (336-419)||(33757871-33757954)
chr8 (364-418)||(6785834-6785888)
chr8 (386-419)||(33758173-33758206)
chr8 (364-421)||(38072941-38072998)
chr8 (331-391)||(22209985-22210045)
chr8 (364-419)||(23767198-23767254)
[»] chr5 (9 HSPs)
chr5 (331-415)||(7630619-7630703)
chr5 (331-419)||(21034621-21034709)
chr5 (331-419)||(40972121-40972209)
chr5 (331-421)||(41863732-41863822)
chr5 (331-416)||(26032249-26032334)
chr5 (335-395)||(40971862-40971922)
chr5 (364-421)||(14945694-14945751)
chr5 (367-419)||(9509103-9509155)
chr5 (336-412)||(30856376-30856452)
[»] chr7 (9 HSPs)
chr7 (331-419)||(33005134-33005223)
chr7 (331-421)||(18503563-18503653)
chr7 (343-406)||(2147102-2147165)
chr7 (331-416)||(14584929-14585014)
chr7 (331-416)||(15998799-15998884)
chr7 (332-417)||(25245012-25245097)
chr7 (334-415)||(33998854-33998934)
chr7 (364-421)||(12422594-12422651)
chr7 (382-418)||(36391384-36391420)
[»] chr2 (12 HSPs)
chr2 (331-419)||(35665587-35665675)
chr2 (331-418)||(12926506-12926593)
chr2 (331-421)||(35665323-35665413)
chr2 (331-416)||(25954750-25954835)
chr2 (365-420)||(10373887-10373942)
chr2 (331-421)||(28191735-28191824)
chr2 (339-419)||(24895742-24895822)
chr2 (350-418)||(27002994-27003062)
chr2 (337-391)||(578237-578291)
chr2 (331-421)||(7876443-7876531)
chr2 (331-420)||(35652090-35652178)
chr2 (334-409)||(30956056-30956132)
[»] chr6 (2 HSPs)
chr6 (331-415)||(4096769-4096853)
chr6 (336-413)||(1112024-1112101)
[»] chr1 (13 HSPs)
chr1 (336-418)||(33261690-33261771)
chr1 (336-418)||(33281849-33281930)
chr1 (331-420)||(1691294-1691383)
chr1 (334-415)||(14398280-14398361)
chr1 (350-416)||(362675-362741)
chr1 (382-421)||(51489590-51489629)
chr1 (331-421)||(14397986-14398076)
chr1 (331-419)||(27085952-27086042)
chr1 (331-420)||(27086250-27086339)
chr1 (336-421)||(33261979-33262064)
chr1 (336-421)||(33282138-33282223)
chr1 (364-420)||(2119518-2119574)
chr1 (371-415)||(41064612-41064656)
[»] scaffold0939 (1 HSPs)
scaffold0939 (331-419)||(708-796)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 9016893 - 9016981
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9016893 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaagtttatttaaccct 9016981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 9016571 - 9016719
Alignment:
Q  12 gttaggataattcttctcaatgtacaagcctggtgtgggaaggtacgttaaagtcaaccacaaattctaagaaacacatactgagtgtgactagtaaagc 111  Q
    ||||||||||||||||||| | |||||| ||| | || |||| || |||||| |||| |||||||||||| ||||||  ||| | | |||||||||||||    
T  9016571 gttaggataattcttctcactttacaagtctgttttgtgaagttatgttaaattcaatcacaaattctaaaaaacacggacttattttgactagtaaagc 9016670  T
Q  112 agggcaatatttcatgtatataattataggttaggatttagcccctcca 160  Q
    |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  9016671 attgcaatatttcatgtatataattataggttaggatttagcccctcca 9016719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 332 - 420
Target Start/End: Original strand, 16024807 - 16024895
Alignment:
Q  332 tgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    ||||||||||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||||| |||||| || |||||||||||||    
T  16024807 tgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggacgaataacttatttaacccta 16024895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 419
Target Start/End: Original strand, 54394591 - 54394674
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||||||||||| |||||| || ||||| | ||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  54394591 aggatgaaaacattttattttaatttttaggaatgaaaatcaaagtttgatatatttatagagacaaaaaatttatttaaccct 54394674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 1742055 - 1741971
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||||||||||||||| ||||||||||| |||||||  |||| |||| |||||||||||||||| || |||||  ||||||||    
T  1742055 ttgtgaggatgaaaacatctcattttattttttagggattaaaatcaaaatttgatatatttatagggatgaaaatcttatttaa 1741971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 31989890 - 31989802
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||| ||  |||| |||| |||||||| ||||  ||| |||||||||||||||  ||||||||| ||||||||||||    
T  31989890 ttgtgaggatgaaaacgttcaatttaattttttagggactaaaatgaaaatttgatatatttatatggacgaaaaacttatttaaccct 31989802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 35105131 - 35105074
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||  |||||||||||||    
T  35105131 agggactaaaacgaaaatttgatatatttatagagaccaaaaacatatttaaccctat 35105074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 9016755 - 9016787
Alignment:
Q  196 gtgagaaatatgagataataatagctgaagttg 228  Q
    |||||||||||||||||||||||||||||||||    
T  9016755 gtgagaaatatgagataataatagctgaagttg 9016787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 16024608 - 16024520
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||| ||||||||||||   ||| |||| |||||||  |||| |||| || | ||||||||| ||||||||||| ||||||||||||    
T  16024608 ttgtgaagatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatttattgagacgaaaaacttatttaaccct 16024520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 25693383 - 25693295
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||  || ||||||||  || |||| |||| |||| | || |||| |||||| ||||||||| ||||||||||||    
T  25693383 ttgtgaggatgaaaacacctcgttttattttataaggaccaaaatcaaaatatgttataattatagggacgaaaaacttatttaaccct 25693295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 404
Target Start/End: Original strand, 31990147 - 31990220
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaa 404  Q
    |||| |||| ||||| || ||||||| ||| |||||||| ||||  ||| |||||||||||||||| |||||||    
T  31990147 ttgtaaggaggaaaatatctcattttgtttcttagggactaaaattaaaatttgatatatttatagggacgaaa 31990220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 416
Target Start/End: Original strand, 50620600 - 50620645
Alignment:
Q  371 aaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    ||||||||| ||||||||||||| |||||| ||||| |||||||||    
T  50620600 aaaaccaaaatttgatatatttacagagaccaaaaacttatttaac 50620645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 16012951 - 16012895
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    |||||| |||||||||  ||||||||||||||| ||| |||||  ||||||||||||    
T  16012951 agggactaaaaccaaaaattgatatatttatagggaccaaaaacatatttaacccta 16012895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 31401663 - 31401719
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    |||||| ||||| |||  ||||||||||||||||||| |||||  ||||||||||||    
T  31401663 agggactaaaacgaaaagttgatatatttatagagaccaaaaacatatttaacccta 31401719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 36788152 - 36788188
Alignment:
Q  384 gatatatttatagagacgaaaaatttatttaacccta 420  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  36788152 gatatatttatagagaccaaaaatttattttacccta 36788188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 418
Target Start/End: Original strand, 17947288 - 17947375
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    |||||||||||||||||| ||||||||||| |||||||| |||| |||| |||||||||||||||| || ||||||||||||||||||    
T  17947288 ttgtgaggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatatatttatagggatgaaaaatttatttaaccc 17947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 331 - 418
Target Start/End: Complemental strand, 31792710 - 31792623
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    |||||||||||||||||||||||||||||| ||||  || |||| |||| |||||||||||||||| |||||||||||||||||||||    
T  31792710 ttgtgaggatgaaaacatttcattttattttttagaaactaaaatcaaaatttgatatatttatagggacgaaaaatttatttaaccc 31792623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 415
Target Start/End: Original strand, 40154646 - 40154723
Alignment:
Q  337 ggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||||||||| ||||||||||| |||| ||| |||| |||| |||||||||||||||| ||||||||| ||||||||    
T  40154646 ggatgaaaacatgtcattttattt-ttagagactaaaatcaaattttgatatatttatagggacgaaaaacttatttaa 40154723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 417
Target Start/End: Complemental strand, 51203307 - 51203221
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    |||||||||||||| ||||  ||||||||| |||||||| |||| |||| || |  |||||||||| ||||||||| ||||||||||    
T  51203307 ttgtgaggatgaaagcattctattttattttttagggactaaaatcaaaattcgcaatatttatagggacgaaaaacttatttaacc 51203221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 36620993 - 36620916
Alignment:
Q  339 atgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||||||| ||||||||||| ||||| || |||| |||| ||| ||||||||||||  |||||||| |||||||||    
T  36620993 atgaaaacatctcattttattttttaggaactaaaatcaaaatttaatatatttatagttacgaaaaacttatttaac 36620916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 339 - 415
Target Start/End: Complemental strand, 15186933 - 15186857
Alignment:
Q  339 atgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    ||||||||||  |||||||||||||| | || |||| |||| |||||||||||| ||| ||||||||| ||||||||    
T  15186933 atgaaaacatgccattttatttgttaagaactaaaatcaaactttgatatatttttagggacgaaaaacttatttaa 15186857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 342 - 417
Target Start/End: Complemental strand, 2479010 - 2478935
Alignment:
Q  342 aaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    ||||||| |||||||| || |||||||| |||| |||| ||  |||||||||||| ||||||||| ||||||||||    
T  2479010 aaaacatctcattttaatttttagggactaaaatcaaaattaaatatatttatagggacgaaaaacttatttaacc 2478935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 420
Target Start/End: Complemental strand, 41823622 - 41823536
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    ||||||| ||||||| ||||||||| | ||| |||  |||| |||| ||||||||||||||   || |||||| |||||||||||||    
T  41823622 tgaggataaaaacatctcattttatcttttaaggattaaaatcaaaatttgatatatttatgaggatgaaaaacttatttaacccta 41823536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 13427904 - 13427847
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||| ||||| ||| |||||||||||||||| ||| |||||  |||||||||||||    
T  13427904 agggactaaaacaaaattttgatatatttatagggaccaaaaacatatttaaccctat 13427847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 416
Target Start/End: Original strand, 5521526 - 5521590
Alignment:
Q  352 attttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    ||||||||| ||| |||| |||| |||| || | ||||||||||| ||||||||| |||||||||    
T  5521526 attttattttttaaggactaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 5521590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 415
Target Start/End: Complemental strand, 11692237 - 11692153
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||||||||||||||||   ||| |||| |||| ||| |||| |||| || | ||||||||||| || |||||| ||||||||    
T  11692237 ttgtgaggatgaaaacattaagtttaattttttagagactaaaatcaaaattcgctatatttatagggatgaaaaacttatttaa 11692153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 416
Target Start/End: Original strand, 19306075 - 19306127
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||| ||||| ||| |||| ||||||||||||||| |||||| ||||||||    
T  19306075 agggactaaaacaaaaatttggtatatttatagagacaaaaaatatatttaac 19306127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 22008398 - 22008454
Alignment:
Q  363 tagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||| ||||| |||| ||||||||||||||| ||| |||||  |||||||||||    
T  22008398 tagggactaaaacaaaaggttgatatatttatagggaccaaaaacatatttaaccct 22008454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 420
Target Start/End: Complemental strand, 25368581 - 25368525
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    |||||| ||||| |||| | ||||||||||||| ||| |||||| ||||||||||||    
T  25368581 agggactaaaacaaaaggtagatatatttatagggaccaaaaatatatttaacccta 25368525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 331 - 418
Target Start/End: Complemental strand, 158790 - 158703
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||| |||||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||| | |||||||||| |||||||||||    
T  158790 ttgtgtggatgaaaacatctcattttattttttagggaccaaaaccaaaatttgatatatttacatagacgaaaaacttatttaaccc 158703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 417
Target Start/End: Original strand, 15249584 - 15249670
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| |||| |||||||| ||||||| || |||||  ||||||||||    
T  15249584 ttgtgaggatgaaaacatctcattttattttttagtgacgaaaatcaaaatttgatatgtttatagggatgaaaagcttatttaacc 15249670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 23757373 - 23757284
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    |||||||||||||||||| ||||||||||| |||||||  ||||  ||| |||| |||||||||| ||| |||||| | |||| ||||||    
T  23757373 ttgtgaggatgaaaacatctcattttattttttagggattaaaattaaaatttgctatatttataaagatgaaaaactgatttgacccta 23757284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 331 - 395
Target Start/End: Complemental strand, 14046545 - 14046482
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttata 395  Q
    ||||| || ||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||    
T  14046545 ttgtggggttgaaaacatttcattttattt-ttagggactaaaatcaaattttgatatatttata 14046482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 417
Target Start/End: Original strand, 22210238 - 22210321
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    ||||||||||||||||  ||||||||||||| |||  |||| |||| || | ||||||||||  || |||||| ||||||||||    
T  22210238 tgaggatgaaaacattctattttatttgttaaggaataaaatcaaaattcgttatatttataaggatgaaaaacttatttaacc 22210321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 419
Target Start/End: Complemental strand, 33757954 - 33757871
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||||||||| |||||| |||| | |  ||| |||| |||| ||| |||||||||||| || |||||| ||||||||||||    
T  33757954 aggatgaaaacatctcatttcatttttgaaagactaaaatcaaaatttaatatatttatagggatgaaaaacttatttaaccct 33757871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 6785834 - 6785888
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    |||||| ||||| ||| |||||||||||||||||||| |||||  ||||||||||    
T  6785834 agggactaaaacgaaaatttgatatatttatagagaccaaaaacatatttaaccc 6785888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 419
Target Start/End: Original strand, 33758173 - 33758206
Alignment:
Q  386 tatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||| |||||||||||||||||||    
T  33758173 tatatttatagagatgaaaaatttatttaaccct 33758206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 38072941 - 38072998
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||| ||||| |||  ||||||||||||||| |||||||||  |||||||||||||    
T  38072941 agggactaaaacgaaaagttgatatatttatagggacgaaaaacatatttaaccctat 38072998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 391
Target Start/End: Complemental strand, 22210045 - 22209985
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatt 391  Q
    |||||||||||||||||| ||||||||| | ||||| || |||| |||| |||| ||||||    
T  22210045 ttgtgaggatgaaaacatctcattttatcttttaggaacaaaaatcaaaatttgttatatt 22209985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 23767254 - 23767198
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaa-tttatttaaccct 419  Q
    |||||| ||||| |||||||||||||||||||| ||| |||||  ||||||||||||    
T  23767254 agggactaaaacgaaagtttgatatatttatagtgactaaaaacattatttaaccct 23767198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 331 - 415
Target Start/End: Original strand, 7630619 - 7630703
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||| ||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||||||||||||||||| ||||||||    
T  7630619 ttgtaaggatgaaaacatctctttttattttttagggactaaaatcaaaatttgatatatttatagagacgaaaaacttatttaa 7630703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 21034709 - 21034621
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||| ||||||||| ||||||||||| || ||||| | || |||| |||||||||||||||| ||  ||||| ||||||||||||    
T  21034709 ttgtgagggtgaaaacatctcattttattttttggggactataatcaaaatttgatatatttatagggaacaaaaacttatttaaccct 21034621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 40972121 - 40972209
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||| ||||||||  ||||||||| |||||||| |||| |||| || | ||||||||||| || |||||| ||||||||||||    
T  40972121 ttgtgaggataaaaacattctattttattttttagggactaaaatcaaaattcgttatatttatagggatgaaaaaattatttaaccct 40972209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 41863732 - 41863822
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||||||||||||||| |||||||||||  ||| ||  ||||  ||| ||||||||||||| || || |||||| ||||||||||||||    
T  41863732 ttgtgaggatgaaaacatctcattttattttatagagattaaaataaaattttgatatatttacagggatgaaaaacttatttaaccctat 41863822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 26032334 - 26032249
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||||||||||||||||   ||| |||| |||||||  |||| |||| || | ||||||||||| ||||||||| |||||||||    
T  26032334 ttgtgaggatgaaaacattcagtttaattttttagggattaaaatcaaaattcgctatatttatagggacgaaaaacttatttaac 26032249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 40971922 - 40971862
Alignment:
Q  335 gaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttata 395  Q
    |||||||||||||| ||||||||||| |||||||| |||| |||| |||  ||||||||||    
T  40971922 gaggatgaaaacatctcattttattttttagggactaaaatcaaaatttattatatttata 40971862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 14945751 - 14945694
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||| ||||| |||  ||| ||||||||||||||| |||||| |||||||||||||    
T  14945751 agggactaaaacgaaaaattggtatatttatagagactaaaaatatatttaaccctat 14945694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 9509155 - 9509103
Alignment:
Q  367 gacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    ||||||||| |||  |||| |||||||||||||| |||||| |||||||||||    
T  9509155 gacgaaaacgaaaagttgacatatttatagagaccaaaaatatatttaaccct 9509103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 30856376 - 30856452
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatt 412  Q
    |||||||||||||   |||| |||| |||||||  ||||||||| || | ||||||| ||| |||||||||||||||    
T  30856376 aggatgaaaacatcctatttcattttttagggaacaaaaccaaaattcgttatatttttagggacgaaaaatttatt 30856452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 33005134 - 33005223
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgtt-agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||| | ||||||||||| || ||||||||||| |||| ||| |||||||||||| ||||||||| ||||||||||||    
T  33005134 ttgtgaggatgaaaacttctcattttatttttttagggacgaaaagcaaaatttaatatatttatagggacgaaaaacttatttaaccct 33005223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 18503653 - 18503563
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||||||||||||||| ||||||||||| |||||||  |||| |||| |||||||||||||||  ||||||||| ||| |||| |||||    
T  18503653 ttgtgaggatgaaaacatctcattttattttttagggataaaaatcaaaatttgatatatttataaggacgaaaaacttagttaaacctat 18503563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 343 - 406
Target Start/End: Original strand, 2147102 - 2147165
Alignment:
Q  343 aaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaa 406  Q
    |||||| ||||||||||| |||||||||||||| ||| ||| ||||||| ||||||||||||||    
T  2147102 aaacatctcattttattttttagggacgaaaactaaaatttaatatattgatagagacgaaaaa 2147165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 14585014 - 14584929
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||| |||||||||||  | |||||||| |||||||| |||| |||| |||  ||||||| ||||||||||||| |||||||||    
T  14585014 ttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttattatatttttagagacgaaaaaattatttaac 14584929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 15998884 - 15998799
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||| |||||||||||  | |||||||| |||||||| |||| |||| |||  ||||||| ||||||||||||| |||||||||    
T  15998884 ttgtgatgatgaaaacatcacgttttattttttagggactaaaatcaaaatttactatatttttagagacgaaaaaattatttaac 15998799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 417
Target Start/End: Complemental strand, 25245097 - 25245012
Alignment:
Q  332 tgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacc 417  Q
    ||||| ||||||||||||||||||||| | |||||||  |||| |||| || | ||| ||||||| || |||||| ||||||||||    
T  25245097 tgtgaagatgaaaacatttcattttatattttagggatcaaaatcaaaattcgctatttttatagggatgaaaaacttatttaacc 25245012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 33998854 - 33998934
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    ||||||| |||| || ||||||||||| |||||||| |||| |||| ||| ||||||||||| |||| ||||| ||||||||    
T  33998854 tgaggataaaaatatctcattttattttttagggactaaaatcaaaatttaatatatttataaagac-aaaaacttatttaa 33998934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 12422651 - 12422594
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||| ||||| ||| |||||||||||||||| ||| |||||| |||||||| ||||    
T  12422651 agggaccaaaacgaaaatttgatatatttatagggaccaaaaatatatttaactctat 12422594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 36391420 - 36391384
Alignment:
Q  382 ttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  36391420 ttgatatatttatagagactaaaaatatatttaaccc 36391384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 35665587 - 35665675
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||| |||||||| || |||||||| |||| |||| ||||||||  |||||| ||| ||||||||||||||||||    
T  35665587 ttgtgaggatgaaaacatctcattttagtttttagggactaaaatcaaattttgatatgcttatagggacaaaaaatttatttaaccct 35665675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 331 - 418
Target Start/End: Complemental strand, 12926593 - 12926506
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    |||||||||||||||||  ||||||||||| | ||||||||||| |||| ||  |||||||||||| || |||||| |||||||||||    
T  12926593 ttgtgaggatgaaaacaactcattttatttttcagggacgaaaatcaaaattcaatatatttatagtgatgaaaaacttatttaaccc 12926506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 35665413 - 35665323
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||||||||||||||||   ||| |||| |||||||| |||| |||| || | ||||||||||  ||||||||| ||||||||||||||    
T  35665413 ttgtgaggatgaaaacattcactttaattttttagggactaaaatcaaaattcgctatatttataaggacgaaaaacttatttaaccctat 35665323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 416
Target Start/End: Original strand, 25954750 - 25954835
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    |||||||||||||||||| ||||||||||| ||||  || |||| |||| | ||||||| ||| || | |||||||||||||||||    
T  25954750 ttgtgaggatgaaaacatctcattttattttttagaaactaaaatcaaaatctgatatagttacaggggcgaaaaatttatttaac 25954835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 365 - 420
Target Start/End: Complemental strand, 10373942 - 10373887
Alignment:
Q  365 gggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    ||||| ||||| |||| |||||||||||||| ||||||||||| ||||||||||||    
T  10373942 gggactaaaacgaaagattgatatatttataaagacgaaaaatatatttaacccta 10373887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 28191735 - 28191824
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||||||||||||||| |||||||||||  ||  ||  |||| |||| ||||||||||||||||| |  ||||| ||||||||||||||    
T  28191735 ttgtgaggatgaaaacatctcattttattttgtaaagattaaaatcaaaatttgatatatttataga-aaaaaaaaattatttaaccctat 28191824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 419
Target Start/End: Original strand, 24895742 - 24895822
Alignment:
Q  339 atgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||  |||||||||  ||||||| |||| |||| |||| ||||||| ||  ||||||||| ||||||||||||    
T  24895742 atgaaaacattcaattttattttgtagggactaaaatcaaaatttgttatatttgtaaggacgaaaaacttatttaaccct 24895822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 350 - 418
Target Start/End: Original strand, 27002994 - 27003062
Alignment:
Q  350 tcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||||||||| |||||||| |||| | || ||||| |||||||||| ||||||| | |||||||||||    
T  27002994 tcattttattttttagggactaaaatccaaatttgacatatttatagggacgaaacacttatttaaccc 27003062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 578291 - 578237
Alignment:
Q  337 ggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatt 391  Q
    |||||||||||| ||||||||||| |||||||| |||| |||| |||| ||||||    
T  578291 ggatgaaaacatctcattttattttttagggactaaaatcaaaatttgctatatt 578237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 7876443 - 7876531
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    ||||||||||||| |||| |||||| |||| |||||||  |||| |||| ||   ||||||||||  ||||||||||||||||||||||||    
T  7876443 ttgtgaggatgaacacatctcattt-attt-ttagggattaaaatcaaaattcattatatttataaggacgaaaaatttatttaaccctat 7876531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 35652090 - 35652178
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    |||||||  ||||||| |||||||| |||| ||||  || ||||  ||| |||||||||||||||| || |||||| |||||||||||||    
T  35652090 ttgtgagagtgaaaacttttcattt-attttttagaaactaaaattaaaatttgatatatttatagggatgaaaaacttatttaacccta 35652178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 409
Target Start/End: Complemental strand, 30956132 - 30956056
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgtt-agggacgaaaaccaaagtttgatatatttatagagacgaaaaattt 409  Q
    ||||||||||||||||| ||||||||| || ||||   ||||| ||| |||| |||||||||||  |||||||||||    
T  30956132 tgaggatgaaaacattttattttattttttaagggcaaaaaacaaaattttgctatatttataggaacgaaaaattt 30956056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 415
Target Start/End: Original strand, 4096769 - 4096853
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||||| ||||||||||| |||||| |||| |||||||  |||| |||| |||||| ||||||||| ||||||||||||||||||    
T  4096769 ttgtgatgatgaaaacatctcatttaattttttagggattaaaatcaaaatttgatttatttatagggacgaaaaatttatttaa 4096853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 1112024 - 1112101
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttattt 413  Q
    ||||||||||||| |||||| |||| |||||||  ||||  ||| | |||||||||||||| ||||||||| ||||||    
T  1112024 aggatgaaaacatctcatttaattttttagggattaaaattaaaatatgatatatttatagggacgaaaaacttattt 1112101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 33261771 - 33261690
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||||||||||| ||||||||||| |||||||| |||| |||| |||||||| ||||||  ||||||||| |||||||||||    
T  33261771 aggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33261690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 33281930 - 33281849
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccc 418  Q
    ||||||||||||| ||||||||||| |||||||| |||| |||| |||||||| ||||||  ||||||||| |||||||||||    
T  33281930 aggatgaaaacatctcattttattttttagggactaaaatcaaaatttgatat-tttataaggacgaaaaacttatttaaccc 33281849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 331 - 420
Target Start/End: Complemental strand, 1691383 - 1691294
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    |||||| ||||||||||| ||||||||  | |||||||| |||| |||| ||| || ||| ||||| ||||||||| |||||||||||||    
T  1691383 ttgtgaagatgaaaacatctcattttacattttagggactaaaatcaaattttaatgtatctatagggacgaaaaacttatttaacccta 1691294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 334 - 415
Target Start/End: Original strand, 14398280 - 14398361
Alignment:
Q  334 tgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    ||||||||||||||| ||||||||||||||||  || |||| |||| ||||||||||||| |  ||||||||| || |||||    
T  14398280 tgaggatgaaaacatctcattttatttgttagaaactaaaatcaaaatttgatatatttacatggacgaaaaacttttttaa 14398361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 416
Target Start/End: Complemental strand, 362741 - 362675
Alignment:
Q  350 tcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaac 416  Q
    ||||||||||| |||||||  |||| |||| ||| |||||||||||| ||||||||| |||||||||    
T  362741 tcattttattttttagggattaaaatcaaattttaatatatttatagggacgaaaaacttatttaac 362675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 51489629 - 51489590
Alignment:
Q  382 ttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  51489629 ttgatatatttatagagaccaaaaatatatttaaccctat 51489590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 421
Target Start/End: Complemental strand, 14398076 - 14397986
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    |||||||||||||||||||   ||| |||| ||||| || |||| |||| || | ||||||||||  || |||||| ||||||||||||||    
T  14398076 ttgtgaggatgaaaacattcagtttaattttttaggaactaaaatcaaaattagttatatttatatggatgaaaaacttatttaaccctat 14397986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 419
Target Start/End: Complemental strand, 27086042 - 27085952
Alignment:
Q  331 ttgtgaggatgaaaacatttca-ttttatttgttagggacgaaaaccaaa-gtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||||||||||||||| ||| |||||||| |||||||| ||||  |||  |||||||||||||||  ||| ||||  ||||||||||||    
T  27086042 ttgtgaggatgaaaacatctcatttttattttttagggactaaaattaaatttttgatatatttataaggacaaaaatcttatttaaccct 27085952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 420
Target Start/End: Original strand, 27086250 - 27086339
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    |||||||||||||||||||   ||| |||| ||| |||| |||| || | |||| ||||||||||  || |||||| |||||||||||||    
T  27086250 ttgtgaggatgaaaacattcagtttaattttttaaggactaaaatcagaatttgttatatttataaggatgaaaaacttatttaacccta 27086339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 33261979 - 33262064
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    ||||||||||||||   ||| |||| |||||||| |||| |||| || | |||||||||||  |||||||| |||||| |||||||    
T  33261979 aggatgaaaacattcagtttaattttttagggactaaaatcaaaattagctatatttataggaacgaaaaacttatttgaccctat 33262064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 33282138 - 33282223
Alignment:
Q  336 aggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccctat 421  Q
    ||||||||||||||   ||| |||| |||||||| |||| |||| || | |||||||||||  |||||||| |||||| |||||||    
T  33282138 aggatgaaaacattcagtttaattttttagggactaaaatcaaaattagctatatttataggaacgaaaaacttatttgaccctat 33282223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 420
Target Start/End: Original strand, 2119518 - 2119574
Alignment:
Q  364 agggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaacccta 420  Q
    |||||| ||||| |||  ||||||||||||||| ||| |||||| ||||||||||||    
T  2119518 agggactaaaacgaaaagttgatatatttatagggaccaaaaatatatttaacccta 2119574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 41064612 - 41064656
Alignment:
Q  371 aaaaccaaagtttgatatatttatagagacgaaaaatttatttaa 415  Q
    |||| |||| || ||||||||||||||||| ||||||||||||||    
T  41064612 aaaaacaaaattcgatatatttatagagactaaaaatttatttaa 41064656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0939 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 419
Target Start/End: Original strand, 708 - 796
Alignment:
Q  331 ttgtgaggatgaaaacatttcattttatttgttagggacgaaaaccaaagtttgatatatttatagagacgaaaaatttatttaaccct 419  Q
    |||||| ||||||||||  ||||| ||||| |||||||  ||||  ||| |||| ||||||||||| ||||||||||||||||||||||    
T  708 ttgtgatgatgaaaacaactcattatattttttagggaataaaattaaaatttgttatatttatagggacgaaaaatttatttaaccct 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University