View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_20 (Length: 425)
Name: NF1140_low_20
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 110 - 416
Target Start/End: Complemental strand, 41083815 - 41083509
Alignment:
| Q |
110 |
gcaaagtttactactgttacatttacgcgatgctaccaaaacacacgaagcttgtttcccttgatatggcaagcaacatgaattaatgctgattacaagg |
209 |
Q |
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| T |
41083815 |
gcaaagtttactactgttacatttacgcgatgctaccaaaacacacgaagcttgtttcccttgatatggcaagcaacatgaattaatgctgattacaagg |
41083716 |
T |
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| Q |
210 |
tacgattatccagctccaattttcaatattccttggcaatttcttcattgcgttaaacgtgaaattaatcttcctgttttgcgacaaagattccaggaaa |
309 |
Q |
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| T |
41083715 |
tacaattatccagctccaatttttaatattccttggcaatttcttcattgcgttaaacgtgaaattaatcttcctgttttgcgacaaagattccaggaaa |
41083616 |
T |
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| Q |
310 |
ggaaaacaaacaagatttggtgacattttgttgttatggactgtggaacatggaaatgtctcgaaaggtttcaattatttgttgcaggccaactatttga |
409 |
Q |
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| T |
41083615 |
ggaaaacaaacaagatttggtgacattttgttgttatggactgtggaacatggaaatgtctcgaaaggtttcaattatttgtcgcaggccaactatttga |
41083516 |
T |
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| Q |
410 |
tgatatt |
416 |
Q |
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| T |
41083515 |
tgatatt |
41083509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 3071036 - 3071089
Alignment:
| Q |
40 |
attcgaaggcagataatggttagttggctacagatcataaatgttaggaggcaa |
93 |
Q |
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| T |
3071036 |
attctaaggcagataatggtaagttggctacaaatcataaatgttaggaggcaa |
3071089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 48839268 - 48839315
Alignment:
| Q |
45 |
aaggcagataatggttagttggctacagatcataaatgttaggaggca |
92 |
Q |
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| T |
48839268 |
aaggtagataatggttagttggctacaaattataaatgttaggaggca |
48839315 |
T |
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