View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_21 (Length: 418)
Name: NF1140_low_21
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 28 - 389
Target Start/End: Original strand, 38184243 - 38184604
Alignment:
| Q |
28 |
aaatgctaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctcc |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184243 |
aaatgctaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctcc |
38184342 |
T |
|
| Q |
128 |
acctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgca |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38184343 |
acctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgca |
38184442 |
T |
|
| Q |
228 |
taactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184443 |
taactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagt |
38184542 |
T |
|
| Q |
328 |
accaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattat |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184543 |
accaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattat |
38184604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 28 - 389
Target Start/End: Original strand, 38179574 - 38179935
Alignment:
| Q |
28 |
aaatgctaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctcc |
127 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38179574 |
aaatgcaaccataggaacccctgaacctaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacctaaagaacggtgcgacaaaacctcc |
38179673 |
T |
|
| Q |
128 |
acctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgca |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38179674 |
acctgactacaccatttcactatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgca |
38179773 |
T |
|
| Q |
228 |
taactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagt |
327 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38179774 |
taactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagt |
38179873 |
T |
|
| Q |
328 |
accaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38179874 |
accaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaattat |
38179935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 28 - 386
Target Start/End: Original strand, 38169760 - 38170118
Alignment:
| Q |
28 |
aaatgctaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctcc |
127 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38169760 |
aaatgcaaccataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctcc |
38169859 |
T |
|
| Q |
128 |
acctgactacaccatttcactatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgca |
227 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||| | |||||| |||| | || |||||||||||||| |
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| T |
38169860 |
acctgactacaccattttactatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgtt |
38169959 |
T |
|
| Q |
228 |
taactttttcatctctaattacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagt |
327 |
Q |
| |
|
| ||||| ||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||||| |
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|
| T |
38169960 |
gtaattttttatctctaataacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagt |
38170059 |
T |
|
| Q |
328 |
accaaatgaaacataaaccacagacgattcatcctttgaatccaaccattcaaagtaat |
386 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||||||||||||||| || ||||| |
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| T |
38170060 |
accaaatgaaacataaacaacagacttttcatcctttgaatccaaccattgaatgtaat |
38170118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 35060909 - 35060794
Alignment:
| Q |
41 |
ggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgactacacc |
140 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||||| |||||||| |||| |||||||||||| ||| || || | ||||||||| ||| ||||| |
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|
| T |
35060909 |
ggaaccccagataccaaactttccaaagtcgagttccaaccacaatgagtcaaaaaacaacccaatgaagaatgggaaagaacctccacttgagaacacc |
35060810 |
T |
|
| Q |
141 |
atttcactatcttccc |
156 |
Q |
| |
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| |||||||||||||| |
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|
| T |
35060809 |
acttcactatcttccc |
35060794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 35054177 - 35054056
Alignment:
| Q |
35 |
accataggaacccctgaacccaaactttccaaagtcgaattccatccacaatgcgtcataaaacaacccaaagaacggtgcgacaaaacctccacctgac |
134 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||||||| ||||| || |||| |||||||||||| ||| | || || | || ||||| ||| |
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| T |
35054177 |
accataggaaccccttttaccaagctttccaaagttgaattccaaccacagtgtgtcaaaaaacaacccaatgaaggatgtgaaagaatctccatttgag |
35054078 |
T |
|
| Q |
135 |
tacaccatttcactatcttccc |
156 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
35054077 |
aacaccatttcactatcttccc |
35054056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 35053988 - 35053880
Alignment:
| Q |
248 |
acccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaacca |
347 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||| || ||||||||||| ||||||||| ||||||| | | ||||||||||||||||||||| |
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|
| T |
35053988 |
acccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacataaacca |
35053889 |
T |
|
| Q |
348 |
cagacgatt |
356 |
Q |
| |
|
|||| |||| |
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|
| T |
35053888 |
cagaagatt |
35053880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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