View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_low_22 (Length: 412)

Name: NF1140_low_22
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_low_22
NF1140_low_22
[»] chr4 (4 HSPs)
chr4 (10-326)||(27436807-27437123)
chr4 (10-326)||(27945299-27945615)
chr4 (10-307)||(27549106-27549392)
chr4 (13-252)||(26766209-26766448)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 27437123 - 27436807
Alignment:
Q  10 ccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctcct 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27437123 ccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctcct 27437024  T
Q  110 tcatatcagctccagctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccaagtatgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27437023 tcatatcagctccagctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgt 27436924  T
Q  210 ctgcatgtataccgcgtttattgcaactgcatttgtgaacatttgaattagacaattataagaaaataatagtaataataattacaattcaaattgttta 309  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27436923 ctgcatgtataccgcgtttattgcagctgcatttgtgaacatttgaattagacaattataagaaaataatagtaataataattacaattcaaattgttta 27436824  T
Q  310 gagtattactgaccagc 326  Q
    |||||||||||||||||    
T  27436823 gagtattactgaccagc 27436807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 27945615 - 27945299
Alignment:
Q  10 ccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctcct 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27945615 ccacagatatttcgtcccctgcaaatcttgtagtatccgttctctccccaggtctcaccccacgagtttttaacgatccaatacggcttctccttctcct 27945516  T
Q  110 tcatatcagctccagctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccaagtatgt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27945515 tcatatcagctccagctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccacgtatgt 27945416  T
Q  210 ctgcatgtataccgcgtttattgcaactgcatttgtgaacatttgaattagacaattataagaaaataatagtaataataattacaattcaaattgttta 309  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27945415 ctgcatgtataccgcgtttattgcagctgcatttgtgaacatttgaattagacaattataagaaaataatagtaataataattacaattcaaattgttta 27945316  T
Q  310 gagtattactgaccagc 326  Q
    |||||||||||||||||    
T  27945315 gagtattactgaccagc 27945299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 27549106 - 27549392
Alignment:
Q  10 ccacagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctcct 109  Q
    ||||||||||||||||| || |||||||| |||||||| || |||||||| ||||| ||||| ||| ||||||| |||||||||||||||||||||        
T  27549106 ccacagatatttcgtcccctacaaatcttatagtatccattttctccccacgtctcgccccaggagcttttaacaatccaatacggcttctccttcgt-- 27549203  T
Q  110 tcatatcagctccagctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccaagtatgt 209  Q
      |||        |||||||||||| |||||||| |||||||||||| |||||||||||||||||||  |||||||||| ||||  ||||||| ||||||    
T  27549204 --ata--------agctccagaaccgtaccccaccagcaaaactccatgatccagcctccttgtacaagtgtatgggcacgatacacctcccacgtatgt 27549293  T
Q  210 ctgcatgtataccgcgtttattgcaactgcatttgtgaacatttgaattagacaattataag-aaaataatagtaataataattacaattcaaattgtt 307  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||    
T  27549294 ctgcatgtatgccgcatttatggcaactgcatttgtgaacatttgaattagataattataagtaaaataatagtaataataattataattcaaattgtt 27549392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 26766448 - 26766209
Alignment:
Q  13 cagatatttcgtcctctgcaaatcttgtagtatccgttctctccccaagtctcaccccacgagtttttaacgatccaatacggcttctccttctccttca 112  Q
    |||||||||||||| ||||| || || |||||||| || |||||||||||||||||||| ||||||||||  |||||||| ||||||||||||  | | |    
T  26766448 cagatatttcgtcccctgcatattttatagtatccattttctccccaagtctcaccccatgagtttttaattatccaatatggcttctccttcaacctaa 26766349  T
Q  113 tatcagctccagctccagaaccataccccacaagcaaaactccaagatccagcctccttgtacatatgtatgggcatgatattcctcccaagtatgtctg 212  Q
    ||   |     |||||||| ||||| ||||| || || |||||| |||| || ||| |||  ||||||||||| ||||||| |||||| | ||| || ||    
T  26766348 taggcgaataggctccagatccatatcccaccagtaacactccatgatctagtctctttgagcatatgtatggacatgatactcctccaacgtacgtttg 26766249  T
Q  213 catgtataccgcgtttattgcaactgcatttgtgaacatt 252  Q
    ||| ||||| || || |  ||||||||||||||| |||||    
T  26766248 catatatacggcattcaaggcaactgcatttgtgcacatt 26766209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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