View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1140_low_23 (Length: 377)
Name: NF1140_low_23
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 10697563 - 10697881
Alignment:
| Q |
11 |
caaaggcaacaagacgtccgtaaatttgtcattgtgacttgtgagaaatgatatttaatatacttgtaattgaatacatgcatataaaaacagttgtgtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10697563 |
caaaggcaacaagacgtccgtaaatttgtctttgtgacttgtgagaaatgatatttaatatacttgtaattgaatacatgcatataaaaacacttgtgtt |
10697662 |
T |
|
| Q |
111 |
attttccaaaacaaaactttcacatcaaatttcaaccacaattttgatgaaaataacatgtactcgtgaatcactaatcatctacatagcacaactaact |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10697663 |
attttccaatacaaaactttcacatcaaacttcaaccacaattttcatgaaaataacatgtactcgtgaatcactaatcatctacatagcacaactaact |
10697762 |
T |
|
| Q |
211 |
ataatttttagatgtaaaaatatacattatttttgtgggttgggtttggaggtttagggttcaaattctaacaaagagaaaaaactaacatagcaactaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10697763 |
ataatttttagatgtaaaaatatacattatttttgtgggttgggtttggaggtttaaggttcaaattctaacaaagagaaaaaactaacatagcaactaa |
10697862 |
T |
|
| Q |
311 |
cataataatatttgtcatt |
329 |
Q |
| |
|
||| |||||||| ||||| |
|
|
| T |
10697863 |
tatactaatatttatcatt |
10697881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 329
Target Start/End: Complemental strand, 13762239 - 13762195
Alignment:
| Q |
285 |
agagaaaaaactaacatagcaactaacataataatatttgtcatt |
329 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
13762239 |
agagaaaaaactaacataacaattaacatattaatatttgtcatt |
13762195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University