View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_26 (Length: 360)
Name: NF1140_low_26
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_26 |
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| [»] scaffold0256 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 21549760 - 21550076
Alignment:
| Q |
14 |
aggagaaaatggtagttatttcgttcaagttgtagtttcctagatgaagatggttttgagagtgggggtgcactagcactcacaagttggaaaccnnnnn |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21549760 |
aggagaaaatggtagttatttcgttcaagttgtagtttcctagatgaagatggttatgagagtgggggtgcactagcactcacaagttggaaaccgaaaa |
21549859 |
T |
|
| Q |
114 |
nnngttgcgtcttggaatcaggctgctcttatcatgtgtgcacgaaaaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttgg |
213 |
Q |
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||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21549860 |
aa-gttgcgtcttgga-tcaagctgctcttatcatgtgtgcccgaaaaaggagtattttgagactttagagctaaaagtatgcggagtcgttcggcttgg |
21549957 |
T |
|
| Q |
214 |
aaacaacaaggcttgaaaagttcaaggtatgtgtaccattcgtctgaagatgttagttaatcgtaaattccttaaacctgtttaatagtctagattatta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21549958 |
aaacaacaaggcttgaaaagttcaaggtatgtgtaccatttgtctgaagatgttagttaatcgtaaattccttaagcctgtttaatagtctagattatta |
21550057 |
T |
|
| Q |
314 |
aacatggcatgtgtaaagt |
332 |
Q |
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||||||||||||||||||| |
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| T |
21550058 |
aacatggcatgtgtaaagt |
21550076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 267
Target Start/End: Original strand, 10628633 - 10628740
Alignment:
| Q |
160 |
aaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttggaaacaacaaggcttgaaaagttcaaggtatgtgtaccattcgtctg |
259 |
Q |
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| T |
10628633 |
aaaggagtactttgaaactttagagctgaaagaaggtggagttgtttgccttggtaataataaggcttgtaaaattcaaggtatgagtactattcgtctc |
10628732 |
T |
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| Q |
260 |
aagatgtt |
267 |
Q |
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|| ||||| |
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| T |
10628733 |
aaaatgtt |
10628740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 267
Target Start/End: Original strand, 17561 - 17706
Alignment:
| Q |
122 |
gtcttggaatcaggctgctcttatcatgtgtgcacgaaaaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttggaaacaaca |
221 |
Q |
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| T |
17561 |
gtcttggactctggatgctcttatcacatctgtccgagaaaggagtactttgaaacgttagagctgaaagaaggtggagtagttcgccttgggaataata |
17660 |
T |
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| Q |
222 |
aggcttgaaaagttcaaggtatgtgtaccattcgtctgaagatgtt |
267 |
Q |
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| T |
17661 |
aggcttgtaaaattcaaggtatgggtactatccgtctcaaaatgtt |
17706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 10611722 - 10611601
Alignment:
| Q |
122 |
gtcttggaatcaggctgctcttatcatgtgtgcacgaaaaaggagtatttcgagactttagagctaaaagtatgcggagtcgttcggcttggaaacaaca |
221 |
Q |
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|||||||| || || ||||||||||| | || ||| ||||||||| || || || |||||||| ||| | | ||||| ||||| ||||||||||| | |
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| T |
10611722 |
gtcttggactctgggtgctcttatcacatctgtccgagaaaggagtactttgaaacgttagagctggaagaaggtggagtagttcgccttggaaacaata |
10611623 |
T |
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| Q |
222 |
aggcttgaaaagttcaaggtat |
243 |
Q |
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||||||| ||| |||||||||| |
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| T |
10611622 |
aggcttgtaaaattcaaggtat |
10611601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 89
Target Start/End: Complemental strand, 16263322 - 16263290
Alignment:
| Q |
57 |
atgaagatggttttgagagtgggggtgcactag |
89 |
Q |
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| T |
16263322 |
atgaagatggttttgagagtgcgggtgcactag |
16263290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 1468 - 1416
Alignment:
| Q |
56 |
gatgaagatggttttgagagtgggggtgcactagcactcacaagttggaaacc |
108 |
Q |
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||||||||||||| |||||||| ||||||||||| ||||||||||| |||| |
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| T |
1468 |
gatgaagatggttatgagagtgcgggtgcactagtggtcacaagttgggaacc |
1416 |
T |
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