View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_27 (Length: 357)
Name: NF1140_low_27
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_27 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 50804717 - 50805053
Alignment:
| Q |
21 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804717 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50804816 |
T |
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| Q |
121 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
220 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
50804817 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50804916 |
T |
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| Q |
221 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50804917 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50805016 |
T |
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| Q |
321 |
acatgctagacaaaaaacaaacaacagatgaagaagt |
357 |
Q |
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| T |
50805017 |
acatgctagacaaaaaacaaacaacagatgaagaagt |
50805053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 21 - 357
Target Start/End: Complemental strand, 50871160 - 50870824
Alignment:
| Q |
21 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
120 |
Q |
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| T |
50871160 |
acatcatcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagag |
50871061 |
T |
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| Q |
121 |
actacacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttca |
220 |
Q |
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| T |
50871060 |
actacacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcaacacaaatctcaatttca |
50870961 |
T |
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| Q |
221 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
320 |
Q |
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| T |
50870960 |
ttcccctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgaga |
50870861 |
T |
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| Q |
321 |
acatgctagacaaaaaacaaacaacagatgaagaagt |
357 |
Q |
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| T |
50870860 |
acatgctagacaaaaaacaaacaacagatgaagaagt |
50870824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 25 - 357
Target Start/End: Complemental strand, 19057467 - 19057135
Alignment:
| Q |
25 |
catcaggacatcctacaatcatacataacatacattagtctcggcattgtggtcctacccaactccggggatttgtttctaccattgtgagcagagacta |
124 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
19057467 |
catcaggacatcctacaatcacacataacatacattagtcttggcattgtggtcctacctaactccggggatttgtttctaccattgtgagcagagaata |
19057368 |
T |
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| Q |
125 |
cacaatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
224 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057367 |
cacgatttacacagacaaaaaatactaacaaatttatgattgtctgttgtgttgttcgaagagtacataccactttcgacacaaatctcaatttcattcc |
19057268 |
T |
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| Q |
225 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
324 |
Q |
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| T |
19057267 |
cctgaagagcagccctgaaatctccttccagaagtggtaacaaaaccacgtaggtagaaccatcttgccattaaaataatgtagacgaaaatgagaacat |
19057168 |
T |
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| Q |
325 |
gctagacaaaaaacaaacaacagatgaagaagt |
357 |
Q |
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| T |
19057167 |
gctagacaaaaaacaaacaacagatgaagaagt |
19057135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 291
Target Start/End: Complemental strand, 42349049 - 42348931
Alignment:
| Q |
182 |
gaagagtacataccactttcgacacaaatctcaatttcatt---------cccctgaagagcagccctgaaatctccttccagaagtggtaacaaaacca |
272 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||| |
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| T |
42349049 |
gaagagtgcataccactttcgacacaaatctcaatttcattttgatcattcccctgaagaacagccctgaaatctccttccaaaagaggtaacaaaaccg |
42348950 |
T |
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| Q |
273 |
cgtaggtagaaccatcttg |
291 |
Q |
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| T |
42348949 |
cgtaggtagaaccatcttg |
42348931 |
T |
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