View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_low_32 (Length: 331)

Name: NF1140_low_32
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_low_32
NF1140_low_32
[»] chr6 (29 HSPs)
chr6 (4-324)||(5352654-5352974)
chr6 (13-276)||(5242352-5242614)
chr6 (11-126)||(5177930-5178045)
chr6 (11-126)||(5279755-5279870)
chr6 (181-287)||(5439339-5439445)
chr6 (11-115)||(5180774-5180878)
chr6 (14-164)||(5427094-5427244)
chr6 (198-278)||(5100730-5100810)
chr6 (11-124)||(5688894-5689007)
chr6 (17-121)||(5100812-5100916)
chr6 (198-278)||(5135831-5135911)
chr6 (17-121)||(5135913-5136017)
chr6 (11-115)||(5346220-5346324)
chr6 (180-263)||(5398361-5398444)
chr6 (198-287)||(5351703-5351792)
chr6 (11-126)||(5098402-5098517)
chr6 (12-126)||(5126618-5126732)
chr6 (212-278)||(5255984-5256050)
chr6 (17-115)||(5398243-5398341)
chr6 (4-125)||(5065439-5065560)
chr6 (5-210)||(5155918-5156123)
chr6 (10-115)||(5283224-5283329)
chr6 (10-115)||(5256114-5256219)
chr6 (18-125)||(23127300-23127407)
chr6 (10-224)||(2939105-2939319)
chr6 (12-129)||(5072668-5072785)
chr6 (198-278)||(5180644-5180724)
chr6 (5-121)||(5372282-5372398)
chr6 (4-121)||(5351584-5351701)
[»] chr3 (4 HSPs)
chr3 (12-156)||(47985352-47985496)
chr3 (12-156)||(48003926-48004070)
chr3 (12-156)||(47994639-47994783)
chr3 (12-156)||(48013211-48013355)
[»] chr7 (1 HSPs)
chr7 (4-124)||(36212912-36213032)
[»] chr4 (3 HSPs)
chr4 (10-126)||(4132607-4132720)
chr4 (12-123)||(4122636-4122747)
chr4 (51-125)||(7884145-7884219)


Alignment Details
Target: chr6 (Bit Score: 289; Significance: 1e-162; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 5352974 - 5352654
Alignment:
Q  4 ggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttat 103  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  5352974 ggaggggcagagagtagtatcaagtatggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttat 5352875  T
Q  104 ctggtatatgataaaccaattggcaagactttggatttatatcatttaccagatttgaatgtacttccttctagtgatgatgaaaatgagcaccctgtca 203  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  5352874 ctggtatatgataaaccaattggaaagactttggatttatatcatttaccagatttgaatgtccttgcttctagtgatgatgaaaatgagcaccctgtca 5352775  T
Q  204 agagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaaagatggtaagagtaatgactggagt 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5352774 agagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaaagatggtaagagcaatgactggagt 5352675  T
Q  304 ttctagattttatctgtggtg 324  Q
    |||||||||||||||||||||    
T  5352674 ttctagattttatctgtggtg 5352654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 276
Target Start/End: Complemental strand, 5242614 - 5242352
Alignment:
Q  13 gagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatat 112  Q
    ||||||||||| |||||| || || ||| ||||||| ||||| ||| |||||||||||||  ||||||| ||||||||||||  | ||||||| ||||||    
T  5242614 gagagtagtatgaagtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatat 5242515  T
Q  113 gataaaccaattggcaagactttggatttatatcatttaccaga-tttgaatgtacttccttctagtgatgatgaaaatgagcaccctgtcaagagattc 211  Q
    ||| ||||||||||||  |    ||| ||||||||| | ||||| ||||||||   || ||| ||| | ||||||| |||| | | ||||||||||||||    
T  5242514 gatgaaccaattggcagaaaaaaggagttatatcatgtgccagattttgaatgacattacttatagaggtgatgaagatgaacgctctgtcaagagattc 5242415  T
Q  212 tctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatg 276  Q
    |||| |||||||||||   |||| ||  ||||||||||| |||  |||||||||||| |||||||    
T  5242414 tctactgaagaggagcctgctgatgacttcaatcagaacggaa--aagaaaaatcgagtggaatg 5242352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 5177930 - 5178045
Alignment:
Q  11 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 110  Q
    |||||||||||||||||||| || ||  || ||||||| ||||| |||||||||||||||||  ||||||| |||||||| |||||| ||||||| ||||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  111 atgataaaccaattgg 126  Q
    ||||| ||||||||||    
T  5178030 atgatgaaccaattgg 5178045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 5279755 - 5279870
Alignment:
Q  11 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 110  Q
    |||||||||||||||||||| || ||  || ||||||| ||||| |||||||||||||||||  ||||||| |||||||| |||||| ||||||| ||||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  111 atgataaaccaattgg 126  Q
    ||||| ||||||||||    
T  5279855 atgatgaaccaattgg 5279870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 5439339 - 5439445
Alignment:
Q  181 tgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaaag 280  Q
    |||||||||||| | |||||  ||||||||||||| || |||||||| |||||| ||  |||||| |||||||||||||||||||||||||||||||||     
T  5439339 tgatgaaaatgaacgccctgctaagagattctctactggagaggagcccactgatgacttcaatcggaacagaaagaagaaaaatcgaatggaatgaaaa 5439438  T
Q  281 atggtaa 287  Q
    |||||||    
T  5439439 atggtaa 5439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 5180878 - 5180774
Alignment:
Q  11 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 110  Q
    ||||| ||||||||||| || || |||||| ||||||| ||||| ||| |||||||||||||  ||||||| |||||||||||| |||||||||||||||    
T  5180878 cagagggtagtatcaagcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtat 5180779  T
Q  111 atgat 115  Q
    |||||    
T  5180778 atgat 5180774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 5427094 - 5427244
Alignment:
Q  14 agagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatg 113  Q
    ||||||||||||||||| || || ||| ||||| | ||||| ||| |||||||||||||  ||||| | |||| |||||||  | ||||||| |||||||    
T  5427094 agagtagtatcaagtatagaacctggtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatg 5427193  T
Q  114 ataaaccaattggcaagactttggatttatatcatttaccagatttgaatg 164  Q
    || ||||||||||||| |   |||| ||||||||| |||||||||||||||    
T  5427194 atgaaccaattggcaaaaaaatggagttatatcatgtaccagatttgaatg 5427244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 5100810 - 5100730
Alignment:
Q  198 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 278  Q
    |||||||||||||||||| ||||||||||| |||||| ||  ||||||||||||||||||||||||| ||| |||||||||    
T  5100810 ctgtcaagagattctctactgaagaggagcccactgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5100730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 5689007 - 5688894
Alignment:
Q  11 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 110  Q
    |||||||||||||||||||| || ||  || ||||||| ||||| |||  ||||||||||||  ||||||| |||||||| |||||| ||||||| ||||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  111 atgataaaccaatt 124  Q
    ||||| ||||||||    
T  5688907 atgatgaaccaatt 5688894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 5100916 - 5100812
Alignment:
Q  17 gtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgata 116  Q
    |||||||||||||| || |||||| ||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||| ||||| |||     
T  5100916 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5100817  T
Q  117 aacca 121  Q
    |||||    
T  5100816 aacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 5135911 - 5135831
Alignment:
Q  198 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 278  Q
    |||||||||||||||||| ||||||||||| || ||| ||  ||||||||||||||||||||||||| ||| |||||||||    
T  5135911 ctgtcaagagattctctactgaagaggagcccaatgatgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5135831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 5136017 - 5135913
Alignment:
Q  17 gtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgata 116  Q
    |||||||||||||| || |||||| ||||||| ||||| |||||||||||||||||  ||||||| ||||| |||||| || ||||||| ||||| |||     
T  5136017 gtagtatcaagtatagaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatg 5135918  T
Q  117 aacca 121  Q
    |||||    
T  5135917 aacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 5346220 - 5346324
Alignment:
Q  11 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 110  Q
    |||||||| ||||||||||| || || ||| ||||||| ||||| || |||||| |||||||| ||||||| |||||||||||| ||||||||||  |||    
T  5346220 cagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatat 5346319  T
Q  111 atgat 115  Q
    |||||    
T  5346320 atgat 5346324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 263
Target Start/End: Original strand, 5398361 - 5398444
Alignment:
Q  180 atgatgaaaatgagcaccctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaa 263  Q
    ||||||||||||| | |||||||||||||||||||| |||||| |||| |||||| ||  |||||||||| |||||||||||||    
T  5398361 atgatgaaaatgaacgccctgtcaagagattctctactgaagatgagcccactgatgacttcaatcagaaaagaaagaagaaaa 5398444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 287
Target Start/End: Original strand, 5351703 - 5351792
Alignment:
Q  198 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaaagatggtaa 287  Q
    |||||||||||||||||| ||||||||||| |||||| ||  | |||||||||||||||||||||||  || |||| |||||||| ||||    
T  5351703 ctgtcaagagattctctactgaagaggagcccactgatgaccttaatcagaacagaaagaagaaaaactgagtggattgaaagatagtaa 5351792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 5098402 - 5098517
Alignment:
Q  11 cagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtat 110  Q
    ||||| ||| |||||||||| || || ||| ||||||| |||||  |||||||||| |||||  ||||||| ||||| |||||| || ||||||||||||    
T  5098402 cagagggtaatatcaagtatagaacctggtaacaaagtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtat 5098501  T
Q  111 atgataaaccaattgg 126  Q
    ||||| ||| ||||||    
T  5098502 atgatgaacaaattgg 5098517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 5126732 - 5126618
Alignment:
Q  12 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 111  Q
    ||||||||||||||||||| ||  | ||| ||||||| ||| | |||||||||||| ||||  ||||||| |||||||||||| |  |||||||  ||||    
T  5126732 agagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatata 5126633  T
Q  112 tgataaaccaattgg 126  Q
    |||| ||||||||||    
T  5126632 tgatgaaccaattgg 5126618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 5256050 - 5255984
Alignment:
Q  212 tctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 278  Q
    |||| ||||||||||| |||||| ||| ||||||||||||||||||||||||| ||| |||||||||    
T  5256050 tctactgaagaggagcccactgatgatttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5255984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 5398243 - 5398341
Alignment:
Q  17 gtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 115  Q
    |||||||||||||| || || ||| ||||||| ||||| ||  ||||||| ||||||  |||||| ||||||||||||||| ||||||| |||||||||    
T  5398243 gtagtatcaagtatagaacctggtaacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 5065560 - 5065439
Alignment:
Q  4 ggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttat 103  Q
    ||||| ||||||||||||||||||||| || || ||  | ||||| ||  | |||||||||||||||||  ||||| | ||||||| ||||||| |||||    
T  5065560 ggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttat 5065461  T
Q  104 ctggtatatgataaaccaattg 125  Q
    ||  |||||||| |||||||||    
T  5065460 ctcatatatgatgaaccaattg 5065439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 5156123 - 5155918
Alignment:
Q  5 gaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatc 104  Q
    |||| |||||| |||||||||||| | || || ||| ||||||| |||||   | ||||||| |||| |  |||||| ||||||||||||||| ||||||    
T  5156123 gaggggcagagggtagtatcaagtctagaacctggtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttatc 5156024  T
Q  105 tggtatatgataaaccaattggcaagactttggatttatatcatttaccagatttgaatgtacttccttctagtgatgatgaaaatgagcaccctgtcaa 204  Q
    | ||||| ||| ||||| ||   || ||  ||||  | |||||| ||| ||||||||||| | || ||| |||| ||||||||||||| | | |||||||    
T  5156023 ttgtatacgatgaaccagtttcaaatacaatggagctgtatcatgtacaagatttgaatgcaatttcttgtagtaatgatgaaaatgaactctctgtcaa 5155924  T
Q  205 gagatt 210  Q
    ||||||    
T  5155923 gagatt 5155918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 5283329 - 5283224
Alignment:
Q  10 gcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggta 109  Q
    |||||| ||| |||||||||| || || ||| ||||||| |||||  |  |||||||||| ||  ||||||| |||||||||||| ||||||||||||||    
T  5283329 gcagagggtaatatcaagtatcgaaccaggtaacaaagtggaggtcatatttgtttttgaaaacagtttcattgtgaagaagacagcaatttatctggta 5283230  T
Q  110 tatgat 115  Q
    ||||||    
T  5283229 tatgat 5283224  T

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Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 5256219 - 5256114
Alignment:
Q  10 gcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggta 109  Q
    |||||| ||| |||||||||| || || ||| ||||||| ||||| ||  |||||||  |||||  |||||| |||||||||||| |||||||| |||||    
T  5256219 gcagagggtaatatcaagtattgaaccaggtaacaaagtggaggtcgtatttgttttcaagaatgatttcattgtgaagaagacagcaatttatttggta 5256120  T
Q  110 tatgat 115  Q
    ||||||    
T  5256119 tatgat 5256114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 23127407 - 23127300
Alignment:
Q  18 tagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataa 117  Q
    |||||||||||   || || ||| ||||| | ||||| ||||| |||||||||||| ||||| | |||||||| |||||| ||||||| ||||||||| |    
T  23127407 tagtatcaagtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatga 23127308  T
Q  118 accaattg 125  Q
    || |||||    
T  23127307 actaattg 23127300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 2939105 - 2939319
Alignment:
Q  10 gcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggta 109  Q
    |||||| |||||||||||| |  | || ||| ||||||| |||||   | ||||| | ||||||  || ||| ||||||||| ||||||||||||| |||    
T  2939105 gcagagggtagtatcaagtctataacctggtaacaaagtggaggtccattttgttatcgagaatgattgcattgtgaagaaggcaacaatttatctcgta 2939204  T
Q  110 tatgataaaccaattggcaagactttggatttatatcatttaccagatttgaatgtacttccttctagtgatgatgaaaatgagcaccctgtcaagagat 209  Q
    |||||| ||||| ||  ||  ||  |||| || |||||| | ||||||||||||| | || ||| |||| | ||||||||||| | | || |||||||||    
T  2939205 tatgatgaaccagtttccagaacaatggagttgtatcatgttccagatttgaatgcaatttcttgtagtaacgatgaaaatgaactctctatcaagagat 2939304  T
Q  210 tctctattgaagagg 224  Q
    | |||  ||||||||    
T  2939305 tatcttctgaagagg 2939319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 5072785 - 5072668
Alignment:
Q  12 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 111  Q
    ||||| ||||||||||||| || || ||| || |||| ||||| || |||||| |||||||   |||||| ||||| ||||||| |||||||||  ||||    
T  5072785 agagattagtatcaagtatagagcctggtaaccaagtggaggttgtcgttgttgttgagaacgatttcattgtgaaaaagacaataatttatctcatata 5072686  T
Q  112 tgataaaccaattggcaa 129  Q
     ||| || ||||||||||    
T  5072685 cgatgaatcaattggcaa 5072668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 5180724 - 5180644
Alignment:
Q  198 ctgtcaagagattctctattgaagaggagcacactgaagatgtcaatcagaacagaaagaagaaaaatcgaatggaatgaa 278  Q
    |||| ||||||||||||  |||||| || ||| | || ||  ||||||||||||||||||||||||| ||| |||||||||    
T  5180724 ctgtgaagagattctctgctgaagacgaacacgccgacgacttcaatcagaacagaaagaagaaaaaccgagtggaatgaa 5180644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 5372282 - 5372398
Alignment:
Q  5 gaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatc 104  Q
    |||| |||||| |||||||||||| | || || ||| ||||||| ||| |   | ||||| | ||||||  |||||| ||||||||||||||||||||||    
T  5372282 gaggggcagagggtagtatcaagtctagaacctggtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttatc 5372381  T
Q  105 tggtatatgataaacca 121  Q
    | ||||| ||| |||||    
T  5372382 tcgtatacgatgaacca 5372398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 5351584 - 5351701
Alignment:
Q  4 ggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttat 103  Q
    ||||| ||||||  ||||||||||||| || ||| || ||||||| |||||  || ||||||| ||||||  || ||| ||||| ||||||  | |||||    
T  5351584 ggaggggcagaggttagtatcaagtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtttat 5351683  T
Q  104 ctggtatatgataaacca 121  Q
    || ||||||||| |||||    
T  5351684 ctcgtatatgatgaacca 5351701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 47985496 - 47985352
Alignment:
Q  12 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 111  Q
    ||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||    
T  47985496 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47985397  T
Q  112 tgataaaccaattggcaagactttggatttatatcatttaccaga 156  Q
    ||||||  |||||||||| ||| | ||| | ||||||||||||||    
T  47985396 tgataattcaattggcaaaactattgatctgtatcatttaccaga 47985352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 48004070 - 48003926
Alignment:
Q  12 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 111  Q
    ||||||||||||||||||| || |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||    
T  48004070 agagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48003971  T
Q  112 tgataaaccaattggcaagactttggatttatatcatttaccaga 156  Q
    ||||||  |||||||||| ||| | ||| | ||||||||||||||    
T  48003970 tgataattcaattggcaaaactattgatctgtatcatttaccaga 48003926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 47994783 - 47994639
Alignment:
Q  12 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 111  Q
    ||||||||||||||||||| ||  ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||    
T  47994783 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 47994684  T
Q  112 tgataaaccaattggcaagactttggatttatatcatttaccaga 156  Q
    ||||||  |||||||||| ||| | ||| | ||||||||||||||    
T  47994683 tgataattcaattggcaaaactattgatctgtatcatttaccaga 47994639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 48013355 - 48013211
Alignment:
Q  12 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 111  Q
    ||||||||||||||||||| ||  ||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| || | || ||||||| |||||    
T  48013355 agagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtttatcttgtata 48013256  T
Q  112 tgataaaccaattggcaagactttggatttatatcatttaccaga 156  Q
    ||||||  |||||||||| ||| | ||| | ||||||||||||||    
T  48013255 tgataattcaattggcaaaactattgatctgtatcatttaccaga 48013211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 36213032 - 36212912
Alignment:
Q  4 ggaggagcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttat 103  Q
    ||||| ||||||| ||||||||||||| || || ||||| ||| | ||||| |||||||||||||||||   |||||| |||||||||||| | ||||||    
T  36213032 ggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttat 36212933  T
Q  104 ctggtatatgataaaccaatt 124  Q
    ||  | |||||| ||||||||    
T  36212932 ctcatttatgatgaaccaatt 36212912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 4132720 - 4132607
Alignment:
Q  10 gcagagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggta 109  Q
    ||||||||||||||||| |||||| || ||||||||||| ||| |   ||||||||||| |||  ||||||| |||| ||||||| || |||||||  ||    
T  4132720 gcagagagtagtatcaaatatggaacctggtgacaaagtcgagat---tgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcata 4132624  T
Q  110 tatgataaaccaattgg 126  Q
    |||||| ||||||||||    
T  4132623 tatgatgaaccaattgg 4132607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 4122747 - 4122636
Alignment:
Q  12 agagagtagtatcaagtatggatcccggtgacaaagtagaggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtata 111  Q
    ||||||| ||||||| |||||| || ||||||||||| ||| | |||||||||||||  ||  ||||||| |||| ||||||| || |||||||  ||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  112 tgataaaccaat 123  Q
    |||| |||||||    
T  4122647 tgatgaaccaat 4122636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 7884219 - 7884145
Alignment:
Q  51 aggtggttgttgtttttgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgataaaccaattg 125  Q
    |||||||||||||||||   |||   ||||| |||||||| |||||||||||||| || |||||| |||||||||    
T  7884219 aggtggttgttgtttttacaaatgaattcattgtgaagaaaacaacaatttatcttgtctatgatgaaccaattg 7884145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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