View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_33 (Length: 326)
Name: NF1140_low_33
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 4384648 - 4384376
Alignment:
| Q |
29 |
atggctgattcatggttcaacccgttgaattgatcggctttatctaatttttaaaacattgctttatatcgaatcgaataaaataagtaattttacctgg |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| |
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| T |
4384648 |
atggctgattcatggttcaacccgttgaattgatcggctttatctaatttttaaaacattactttatatcaaatcgaataaaataagtatttttacctgg |
4384549 |
T |
|
| Q |
129 |
attatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcattt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4384548 |
attatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcattt |
4384449 |
T |
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| Q |
229 |
ttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4384448 |
ttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactct |
4384376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 301
Target Start/End: Original strand, 24068876 - 24069026
Alignment:
| Q |
151 |
gcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttgaatcatttttactatcataatttccaactc |
250 |
Q |
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| T |
24068876 |
gcaacccaaccaccagaaggcacagcaacagtattcctctcaacaggatcaacaagattaaactttgcagggtcactactagcattaaaatttccaaaac |
24068975 |
T |
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| Q |
251 |
ctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatgactct |
301 |
Q |
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|| |||||||||||||||||| || ||||||||||| | ||||||||||| |
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| T |
24068976 |
cttgaccaacaacaaagaaattaaatccatgaagatgcaaaggatgactct |
24069026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 22603817 - 22603756
Alignment:
| Q |
142 |
aatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaac |
203 |
Q |
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| T |
22603817 |
aatctaatggcaacccaaccaccagcaggaacaccaacagtgttcctttcaacaggatcaac |
22603756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 21206068 - 21205979
Alignment:
| Q |
123 |
acctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaa |
212 |
Q |
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| T |
21206068 |
acctggattatctgctaggaatctgatagcaacccatccaccagatggaacaccaactgtattcctttcaacgggatcaacaaggttaaa |
21205979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 21854298 - 21854209
Alignment:
| Q |
123 |
acctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaa |
212 |
Q |
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|||||||||||| ||| |||||| || |||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||| ||||| |
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| T |
21854298 |
acctggattatctgctaggaatctgatagcaacccatccaccagatggaacaccaactgtattcctttcaacaggatcaacaagattaaa |
21854209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 22635357 - 22635406
Alignment:
| Q |
151 |
gcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatc |
200 |
Q |
| |
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|||||||| ||||||||||| |||||| |||| |||||||| |||||||| |
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| T |
22635357 |
gcaacccatccaccagctggaacaccagcagtattcctttcgacaggatc |
22635406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 25093360 - 25093185
Alignment:
| Q |
122 |
tacctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttga |
221 |
Q |
| |
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|||||||||||||||| ||||||| || ||| |||||| |||||||| ||||| || || ||||| || |||||||||||||| |||||||| ||| |
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| T |
25093360 |
tacctggattatcagccttgaatctgatagcagtccaacctccagctggaacacctactgtattcctctccacaggatcaacaagattaaacttttttac |
25093261 |
T |
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| Q |
222 |
atcatttttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatga |
297 |
Q |
| |
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||| |||||| |||| | || || ||| |||||||| ||||||||||| || ||||||||||||| ||||||| |
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| T |
25093260 |
atcctttttagaatcaaagttgccttgtcccctaccaactacaaagaaattaaatccatgaagatgaataggatga |
25093185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 29554735 - 29554559
Alignment:
| Q |
121 |
ttacctggattatcagctctgaatctaatggcaacccaaccaccagctggtacaccaacagtgttcctttcaacaggatcaacaaggttaaacttctttg |
220 |
Q |
| |
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||||||||||||||||| |||||||| || ||| ||| ||||||| ||| |||||||| || || || || ||||||||||| | |||||||| || | |
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| T |
29554735 |
ttacctggattatcagccctgaatctgatagcagtccatccaccagatggaacaccaactgtatttctctccacaggatcaaccaaattaaactttttag |
29554636 |
T |
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| Q |
221 |
aatcatttttactatcataatttccaactcctctaccaacaacaaagaaattgaaaccatgaagatgaacaggatga |
297 |
Q |
| |
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||| |||||| || | |||| || ||| ||||||| |||||||||||||| ||||| ||||||| ||||||| |
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| T |
29554635 |
tatcctttttaggattaaaattcccttgtcccttaccaactacaaagaaattgaatccatgtagatgaataggatga |
29554559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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