View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_low_34 (Length: 322)

Name: NF1140_low_34
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_low_34
NF1140_low_34
[»] chr7 (1 HSPs)
chr7 (13-293)||(48251026-48251320)


Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 48251026 - 48251320
Alignment:
Q  13 agcttatattttcgtttaagctaatataatttgttttcataagctatctaatctatcatcttgaa-----------aatccaaattccagtgtgacttta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||    
T  48251026 agcttatattttcgtttaagctaatataatttgttttcataagctatctaatctatcatcttgaagagcttatgaaaatccaaattccagtttgacttta 48251125  T
Q  102 agttaacatgtagctgaatacaagttcaagttc------tactttcaatgctcatttcaagctactagttcatctgcttcnnnnnnnngtttatatatgt 195  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||         ||| | |||||    
T  48251126 agttaacatgtagctgaatacaagttcaagttcaagttctactttcaatgctcatttcaagctactagttcatctgcttctttttt---tttgtttatgt 48251222  T
Q  196 atttcaatttatttcctaaattatgttactgtttctttcttttcagaatcccgtaagttttctctgcatcagactagagcttcttcttcagaagaaac 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48251223 atttcaatttatttcctaaattatgttactgtttctttcttttcagaatcccgtaagttttctctgcatcagactagagcttcttcttcagaagaaac 48251320  T

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