View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_38 (Length: 301)
Name: NF1140_low_38
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 2472402 - 2472288
Alignment:
| Q |
158 |
gacttcatcataaactttacacatgtgttgtcaaggcacttataaacaaaaggatacataaggcgtggacaactagccacattttcacaataaatttttt |
257 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2472402 |
gacttcatcataaactttacacatttgttgtcaaggcacttataaactaaaggatacataaggcgtggacaactagccgcattttcacaataaatttttt |
2472303 |
T |
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| Q |
258 |
ctacaatgaaagaag |
272 |
Q |
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| T |
2472302 |
ctacaatgaaagaag |
2472288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 2472577 - 2472426
Alignment:
| Q |
8 |
cgaagaatataaaagatacaattattggatgctagtnnnnnnntttaaatggcaactcgcggtacgacaataaggtatgttgcatagannnnnnngctag |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
2472577 |
cgaaaaatataaaagatacaattattggatgctagtaaaaaaaattaaatggcaacacgcggtacaacaataaggtatgttgcatagatttttttgctag |
2472478 |
T |
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| Q |
108 |
tgcaaggactcactcctccttgcatggcgtttgtgtaccctcttgggcgcga |
159 |
Q |
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| T |
2472477 |
tgcaaggactcactcctccttgcatggcgtttgtgtaccgtcttgggcgcga |
2472426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 156
Target Start/End: Original strand, 4734503 - 4734641
Alignment:
| Q |
16 |
ataaaagatacaattattggatgctagtnnnnnnntttaaatggcaactcgcggtacgacaataaggtatgttgcatagannnnnnngctagtgcaagga |
115 |
Q |
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| T |
4734503 |
ataaaagatacaattattggatgctactaaaaagatt-aaatggcaactcacggtataactataaggtatgttgcatagatttttt-gctagtgcaagaa |
4734600 |
T |
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| Q |
116 |
ctcactcctccttgcatggcgtttgtgtaccctcttgggcg |
156 |
Q |
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| T |
4734601 |
ctcactcctccttgcatggcgtttgtgtaccctcttcggcg |
4734641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 38359410 - 38359539
Alignment:
| Q |
17 |
taaaagatacaattattggatgctagtnnnnnnntttaaatggcaactcgcggtacgacaataaggtatgttgcatagannnnnnngctagtgcaaggac |
116 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||| ||||||||| ||||||||||| || |
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| T |
38359410 |
taaaagatacaattattggatgctagtaaaaaa--ttaaatggcaactcgcgatgtaacaacaaggtatattgcatagatttttt-gctagtgcaagaac |
38359506 |
T |
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| Q |
117 |
tcactcctccttgcatggcgtttgtgtaccctc |
149 |
Q |
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| T |
38359507 |
tcactcctccttgcacgacgtttgtgtaccctc |
38359539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 38316058 - 38316020
Alignment:
| Q |
103 |
gctagtgcaaggactcactcctccttgcatggcgtttgt |
141 |
Q |
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| T |
38316058 |
gctagtgcaagaactcactcctccttgcatggcgtttgt |
38316020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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