View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_low_39 (Length: 295)

Name: NF1140_low_39
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_low_39
NF1140_low_39
[»] chr2 (6 HSPs)
chr2 (73-241)||(14529632-14529800)
chr2 (77-241)||(14534858-14535045)
chr2 (179-234)||(14547977-14548032)
chr2 (179-241)||(14553209-14553271)
chr2 (104-173)||(14548059-14548128)
chr2 (76-124)||(14553331-14553379)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 14529800 - 14529632
Alignment:
Q  73 aaataacaccatgagtaaacattccccgactaaataaatacaagaccattcgtgtttttctttatcaactagatatgaggcatatgataaatcataaggt 172  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14529800 aaataacaccatgagtaaacattccctgactaaataaatacaagaccattcgtgtttttctttatcaactagatatgaggcatatgataaatcataaggt 14529701  T
Q  173 actcgggtccaggttagcaaataaaacaagtcagctagatcatcctctatcttggcctagaaagaataa 241  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14529700 actctggtccaggttagcaaataaaacaagtcagctagatcatcctctatcttggcctaaaaagaataa 14529632  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 77 - 241
Target Start/End: Complemental strand, 14535045 - 14534858
Alignment:
Q  77 aacaccatgagtaaacattccccgactaaataaatacaagaccattcgtgtttttctttatcaactagatatgaggcatat--gataaatcataaggt-- 172  Q
    |||||||  |||||||||| || ||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||||  |||||||||||||||      
T  14535045 aacaccacaagtaaacatttcctgaccaaataaatacaagaccattcgagattttctttatctactagatatgaggcatataggataaatcataaggtat 14534946  T
Q  173 -------------------actcgggtccaggttagcaaataaaacaagtcagctagatcatcctctatcttggcctagaaagaataa 241  Q
                       |||| |||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||    
T  14534945 tattgtgaccggctatggcactctggtccaggttagcaaataaatcaagacagctagatcatcctctatcttgggctagaaagaataa 14534858  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 14548032 - 14547977
Alignment:
Q  179 gtccaggttagcaaataaaacaagtcagctagatcatcctctatcttggcctagaa 234  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14548032 gtccaagttagcaaataaaacaagtcagctagatcatcctctatgttggcctagaa 14547977  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 14553271 - 14553209
Alignment:
Q  179 gtccaggttagcaaataaaacaagtcagctagatcatcctctatcttggcctagaaagaataa 241  Q
    |||||||||| |||||||||||||||| ||||||||||| |||  ||||||||||||||||||    
T  14553271 gtccaggttaccaaataaaacaagtcaactagatcatcccctacattggcctagaaagaataa 14553209  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 14548128 - 14548059
Alignment:
Q  104 aaataaatacaagaccattcgtgtttttctttatcaactagatatgaggcatatgataaatcataaggta 173  Q
    |||||||| ||||| |||| | | |||||| |||| ||||||||  ||||||| ||||||||||||||||    
T  14548128 aaataaatgcaagatcatttgagcttttctatatctactagatacaaggcataagataaatcataaggta 14548059  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 14553379 - 14553331
Alignment:
Q  76 taacaccatgagtaaacattccccgactaaataaatacaagaccattcg 124  Q
    ||||||||  || |||||||||| ||| |||||||||||||||||||||    
T  14553379 taacaccacaagaaaacattccctgaccaaataaatacaagaccattcg 14553331  T

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