View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_4 (Length: 659)
Name: NF1140_low_4
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 135 - 477
Target Start/End: Original strand, 9016241 - 9016585
Alignment:
| Q |
135 |
gttaaacaagacacgttagggttatgattaaaatgtaatcctatgacaaattacatactttggctttaatttaacttgacctaacctattcctacactta |
234 |
Q |
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| T |
9016241 |
gttaaacaagacacgttagggttatgactaaaatgtaatcctatgacaaattacatactttggctttaatttaacttgacctaacctattcctatactta |
9016340 |
T |
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| Q |
235 |
ttgttcaacaacttaccaataaaattgaagatcaatttcatgtttctttaattctgctctaattttcccatgtaagtt--nnnnnnnnttcttcaagtta |
332 |
Q |
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| T |
9016341 |
ttgttcaacaacttagcaataaaattgaagatcaatttcatgtttctttaattctgctctaattttcccatgtaagttaaaaaaaaaattctccaagtta |
9016440 |
T |
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| Q |
333 |
aacctatttaatctttcacttttaaattttaattatcatagagtcatctccatttttattgtatttaataaataaactatgttaaaaagtcctatatcag |
432 |
Q |
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| T |
9016441 |
aacctatttaatctttcacttttaaattttaattatcatagagtcatctccatttttattttatttaataaataaactatgttaaaaagtcctatatcag |
9016540 |
T |
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| Q |
433 |
ataagaaatgacatgaactagtgtttataagttaggataattctt |
477 |
Q |
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| T |
9016541 |
ataagaaatgacatgaactagtgtttataagttaggataattctt |
9016585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 495 - 644
Target Start/End: Original strand, 9016571 - 9016720
Alignment:
| Q |
495 |
gttaggataattcttctcactttacaagcctgttttgtgaagttacgttaaattcaaccacaaattctaagaaacacatacttattttgactagtaaagc |
594 |
Q |
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| T |
9016571 |
gttaggataattcttctcactttacaagtctgttttgtgaagttatgttaaattcaatcacaaattctaaaaaacacggacttattttgactagtaaagc |
9016670 |
T |
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| Q |
595 |
attgcaatatttcatgtatataattataggttaggatttagcccctccat |
644 |
Q |
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| T |
9016671 |
attgcaatatttcatgtatataattataggttaggatttagcccctccat |
9016720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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