View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_42 (Length: 268)
Name: NF1140_low_42
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 558000 - 557748
Alignment:
| Q |
1 |
cataaattatctcaaccacactagaatcgtcgtcaatgttgttctcattattgtttctgctagtgttgttacaaagaacatatcgagccaaagttatagc |
100 |
Q |
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| T |
558000 |
cataaattatctcaaccacacgagaatcttc---aatgttgttctcattattgtttctgctagtgttgttacaaagaacatatcgaaccaaagttatagc |
557904 |
T |
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| Q |
101 |
atcttgtatcttcactttatgtttgacaaattattcgagagaaaaaagatttaagattgtctcaattgtgtatatgaaaaatattatgctagatttcaag |
200 |
Q |
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| T |
557903 |
atcttgtatctccactttatgtttgacaaattattcgagagaaaaaagatttaagattgtctcaattgtgtatatgaaaaatattatgctagatttcaag |
557804 |
T |
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| Q |
201 |
agagataaaaatttgaatcaatatgttgtgttaacttctttttatcctcttttctg |
256 |
Q |
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| T |
557803 |
agagataaaaatttgaatcaatatgttgtgttaacttctttttatcctcttttctg |
557748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 222
Target Start/End: Complemental strand, 559658 - 559466
Alignment:
| Q |
33 |
tcaatgttgttctcattattgtttctgctagtgttgttacaaagaacatatcgagccaaagttatagcatct--tgtatcttcactttatgtttgacaaa |
130 |
Q |
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| T |
559658 |
tcaatattgttctcgttattattcctgccagtgttaatacaaagaacatatccaaccaaagatatagcatatcatgtgtcttcactctatgtttgacaac |
559559 |
T |
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| Q |
131 |
ttattcgagagaaaaa----agatttaagattgtctcaattgtgtatatgaaaaatattatgctagatttcaagagagataaaaatttgaatcaat |
222 |
Q |
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| T |
559558 |
ttattcaagagaaaaagaaaagatttaagattatctcaattgtgtatatgaaaaatatgatg-ttgatttcaagagag--aaaaatttgaatcaat |
559466 |
T |
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