View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_43 (Length: 264)
Name: NF1140_low_43
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_43 |
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| [»] scaffold0411 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 50805075 - 50805310
Alignment:
| Q |
1 |
aatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50805075 |
aatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaaccgttgcccgtcgtattctacttttggtttttttctcagactctcaa |
50805174 |
T |
|
| Q |
101 |
aaacatctttgttagcctcatatcaacatagcatgcttcatttatttgctctggtataaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50805175 |
aaacatctttgttagcctcatatcaacatagcatgcttcatttatttgctctggtataaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatcaa |
50805274 |
T |
|
| Q |
201 |
tatggttttgacgaatcaattcctaattgtggactt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50805275 |
tatggttttgacgaatcaattcctaattgtggactt |
50805310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 50870802 - 50870567
Alignment:
| Q |
1 |
aatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50870802 |
aatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaaccgttgcccgtcgtattctacttttggtttttttctcagactctcaa |
50870703 |
T |
|
| Q |
101 |
aaacatctttgttagcctcatatcaacatagcatgcttcatttatttgctctggtataaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50870702 |
aaacatctttgttagcctcatatcaacatagcatgcttcatttatttgctctggtataaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatcaa |
50870603 |
T |
|
| Q |
201 |
tatggttttgacgaatcaattcctaattgtggactt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
50870602 |
tatggttttgacgaatcaattcctaattgtggactt |
50870567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 19057113 - 19056877
Alignment:
| Q |
1 |
aatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnn-ctcagactctca |
99 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19057113 |
aatataaaactgtttaagatatatgaacccgtaaaggataccttgtaagagaaccgttgcccgtcgtattctacttttggttttttttctcagactctca |
19057014 |
T |
|
| Q |
100 |
aaaacatctttgttagcctcatatcaacatagcatgcttcatttatttgctctggtataaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatca |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19057013 |
aaaacatctttgttagcctcatatcaacatagcatgcttcatttatttgctctggtataaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatca |
19056914 |
T |
|
| Q |
200 |
atatggttttgacgaatcaattcctaattgtggactt |
236 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
19056913 |
atatggttttgacgaatcaattcctaattgtggactt |
19056877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 40705731 - 40705496
Alignment:
| Q |
1 |
aatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaa |
100 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
40705731 |
aatataaaactgtt-aagatatatgaacccgtaaaagttaccttgtaagagaaccgttgcccgtcgtattctacttttggatttttccttagactctcaa |
40705633 |
T |
|
| Q |
101 |
aaacatctttgttagcc-tcatatcaacatagcatgcttcatttatttgctctggtataaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatca |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40705632 |
aaacatctttgttagccctcatatcaacatagcatgcttcatttatttgctctggtgtaaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatca |
40705533 |
T |
|
| Q |
200 |
atatggttttgacgaatcaattcctaattgtggactt |
236 |
Q |
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|||||||||||| | |||||||||||||||||||||| |
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| T |
40705532 |
atatggttttgatggatcaattcctaattgtggactt |
40705496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0411 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0411
Description:
Target: scaffold0411; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 11228 - 11463
Alignment:
| Q |
1 |
aatataaaactgtttaagttatatgaacccgtaaaggttaccttgtaagagaaccgttgcccgtcgtattctacttttggnnnnnnnctcagactctcaa |
100 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||||||||||||||||||||| || ||| || |||||| ||||||||||| ||||||||||||| |
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| T |
11228 |
aatataaaattgtt-aagatatatgaacccgtaaaggttaccttgtaagagtactgtttcctgtcgtactctacttttgggtttttcctcagactctcaa |
11326 |
T |
|
| Q |
101 |
aaacatctttgttagcc-tcatatcaacatagcatgcttcatttatttgctctggtataaaagcttgtcgtgtctatcagcaaaccaaaacaccaaatca |
199 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11327 |
aaacatctttgttagccctcagatcaacatagcatgcttcatttatttggttttgtgtaaaagcttgtcgtgtctatcagcaaatcaaaacaccaaatca |
11426 |
T |
|
| Q |
200 |
atatggttttgacgaatcaattcctaattgtggactt |
236 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
11427 |
atatggttttgacgaatcaattcctaattgtggactt |
11463 |
T |
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