View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_low_44 (Length: 261)

Name: NF1140_low_44
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_low_44
NF1140_low_44
[»] chr8 (7 HSPs)
chr8 (1-252)||(456309-456547)
chr8 (1-252)||(1636010-1636248)
chr8 (1-252)||(26616675-26616911)
chr8 (40-134)||(44145821-44145915)
chr8 (156-245)||(38560709-38560798)
chr8 (50-133)||(38560616-38560699)
chr8 (156-245)||(44145724-44145812)
[»] chr3 (11 HSPs)
chr3 (1-252)||(27156116-27156354)
chr3 (1-252)||(54346747-54346985)
chr3 (39-120)||(43813078-43813159)
chr3 (156-245)||(46428575-46428664)
chr3 (171-245)||(43912358-43912432)
chr3 (156-245)||(42794505-42794594)
chr3 (156-245)||(54812339-54812428)
chr3 (50-134)||(42794603-42794687)
chr3 (161-223)||(43812988-43813050)
chr3 (40-134)||(54812236-54812330)
chr3 (50-134)||(46428673-46428757)
[»] chr1 (9 HSPs)
chr1 (1-247)||(23084859-23085092)
chr1 (1-252)||(23949710-23949948)
chr1 (1-252)||(5308654-5308892)
chr1 (1-252)||(50952516-50952754)
chr1 (1-215)||(42677240-42677441)
chr1 (1-248)||(34553821-34554055)
chr1 (156-245)||(22065292-22065381)
chr1 (190-246)||(6293939-6293995)
chr1 (50-130)||(22065199-22065279)
[»] chr4 (7 HSPs)
chr4 (1-252)||(34389754-34389992)
chr4 (1-252)||(36894365-36894603)
chr4 (156-245)||(47597681-47597770)
chr4 (40-131)||(4228291-4228382)
chr4 (156-245)||(43270881-43270970)
chr4 (190-246)||(1369357-1369413)
chr4 (190-246)||(28945496-28945552)
[»] chr7 (6 HSPs)
chr7 (1-252)||(48618946-48619184)
chr7 (1-252)||(8019694-8019931)
chr7 (1-243)||(29213677-29213907)
chr7 (40-245)||(24473467-24473659)
chr7 (40-134)||(24468617-24468711)
chr7 (190-246)||(46045830-46045886)
[»] chr2 (10 HSPs)
chr2 (1-252)||(13186900-13187138)
chr2 (1-252)||(7305029-7305267)
chr2 (1-153)||(6599017-6599169)
chr2 (1-153)||(40426116-40426268)
chr2 (23-215)||(37307265-37307444)
chr2 (1-252)||(40190368-40190606)
chr2 (156-245)||(17290048-17290137)
chr2 (171-248)||(26381377-26381454)
chr2 (50-134)||(17290146-17290230)
chr2 (190-246)||(42865840-42865896)
[»] chr5 (8 HSPs)
chr5 (1-252)||(18259088-18259326)
chr5 (1-252)||(22540222-22540460)
chr5 (4-252)||(34080690-34080925)
chr5 (40-245)||(4560304-4560496)
chr5 (156-245)||(18883400-18883489)
chr5 (40-134)||(18934170-18934264)
chr5 (156-245)||(18934072-18934161)
chr5 (190-246)||(14024858-14024914)
[»] chr6 (1 HSPs)
chr6 (156-245)||(1223053-1223142)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 456309 - 456547
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  456309 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagccaattagcactcctatttccttcgcgtcaagtatggttg 456408  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| ||||| |||||||| |||             ||||||||||||||||||||||||||||||||||||||||||||||||    
T  456409 agttgaacattccaactcatcttcagtagcttccggatc-------------cggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 456495  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  456496 atcatatcaatcaaactctttgaatcactttccactataagatgagagtaat 456547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 1636248 - 1636010
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||||||| | ||||| ||| ||||  ||||||||| ||||||||||||| |||| |||||||||||||||||| ||  |||||||| ||    
T  1636248 aggaggagactccagcacaagaaaattaaaatgatctgtagaaatgattaaattagcgagccaatcagcactcctatttccttcacgctaagtatgggtg 1636149  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||| ||             ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  1636148 agttgaacattccaactcatcttcagcagcttccggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatcagaa 1636062  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  1636061 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 1636010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 26616675 - 26616911
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| ||| ||||  ||||||||| ||||||||| ||| |||| || |||| |||||||||| || ||||||||||||    
T  26616675 aggaggagactccaacactagaaaattaaaatgatctgtagaaatgcttaaattagtgagccaatcagtactcatatttccttcacgccaagtatggttg 26616774  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||  ||||||| || |||               |||||||||||||||||||||||||||||||||||    
T  26616775 agttgaacattccaactcatcttcagcagcttccagatccggtaaactaa---------------caggaatattcccattgaacttgaaattatcagaa 26616859  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  26616860 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 26616911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 44145915 - 44145821
Alignment:
Q  40 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 134  Q
    ||||||| | |||||||| ||||||| |||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  44145915 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 44145821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 38560709 - 38560798
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| ||||||||||| || |||||  |||||||||||| ||| |||||  |||| ||  ||||||||||||||||||||    
T  38560709 tgaactaaaatagggatattcccattaaatttgaacctatcagaaatcacgtcgatcaatatcttcgagccactttccactataagatga 38560798  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 38560616 - 38560699
Alignment:
Q  50 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttc 133  Q
    |||||||| || ||||  ||||| |||||||||||| | ||||||||||||| ||| |||| ||||  |||| |||||||||||    
T  38560616 aaattagcaagccaatcggcacttctatttccttcgtgccaagtatggttgatttgcacatgccaatccattctcagcagcttc 38560699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 44145812 - 44145724
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  44145812 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccac-ataagatga 44145724  T

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Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 27156116 - 27156354
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| ||| ||||  ||||||||| | ||||||||||| |||| |||||||||||||||||| || ||||||||||||    
T  27156116 aggaggagactccaacactagaaaattaaaatgatctgtagaaatgctgaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttg 27156215  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||| |||||||      ||||       ||||||||||||||||||||| ||||||||||||||||||    
T  27156216 agttgaacattccaactcatcttcagcagcttccggatccggt------aaac-------taaaacaggaatattcccattaaacttgaaattatcagaa 27156302  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  27156303 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 27156354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 54346985 - 54346747
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||||||| | ||||| ||| ||||  ||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||| ||    
T  54346985 aggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtg 54346886  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||| ||             ||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  54346885 agttgaacattccaactcatcttcagcagcttccggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatcagaa 54346799  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  54346798 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 54346747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 43813159 - 43813078
Alignment:
Q  39 tagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcat 120  Q
    |||||||| |||| ||||||||||||| |||||||| ||||||||| || ||| ||||||||||||||||||| ||||||||    
T  43813159 tagaaatgcttaagttagcgagtcaatcagcactccaatttccttcacgccaattatggttgagttgaacatttcaactcat 43813078  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 46428664 - 46428575
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  46428664 tgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 46428575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 43912358 - 43912432
Alignment:
Q  171 atattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    ||||||||||| |||||||| || |||||||||||||  |||||  ||||||| |||||||| ||||||||||||    
T  43912358 atattcccattaaacttgaacttctcagaaatcatgttgatcaatatctttgagtcactttcaactataagatga 43912432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 42794594 - 42794505
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| ||||||||||| |||||||| || | |||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  42794594 tgaactaaaataggcatattcccattaaacttgaacttgttagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 42794505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 54812339 - 54812428
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  54812339 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 54812428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 42794687 - 42794603
Alignment:
Q  50 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 134  Q
    |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  42794687 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 42794603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 43813050 - 43812988
Alignment:
Q  161 taaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttga 223  Q
    ||||||| ||||||| |||||  | |||||||||||||||||||| || |||||| |||||||    
T  43813050 taaaacatgaatattgccattacatttgaaattatcagaaatcatatcgatcaaaatctttga 43812988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 134
Target Start/End: Original strand, 54812236 - 54812330
Alignment:
Q  40 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 134  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| | ||  |||| ||||||||||||    
T  54812236 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgctaatccattctcagcagcttcc 54812330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 46428757 - 46428673
Alignment:
Q  50 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 134  Q
    |||||||| || ||||  ||||| |||||||||||  | ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  46428757 aaattagcaagccaatcggcacttctatttccttcatgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 46428673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 23084859 - 23085092
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| ||| ||||||||||||||| ||||||||||||| |||| |||||||||||||||||| || ||| ||||||||    
T  23084859 aggaggagactccaacactagaaaattaaaatgatacgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaaatatggttg 23084958  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||| |||||||      ||||       ||||||| ||||||||||||||||||||||||||||| ||    
T  23084959 agttgaacattccaactcatcttcagcagcttccggatccggt------aaac-------taaaacatgaatattcccattgaacttgaaattatcaaaa 23085045  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgaga 247  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  23085046 atcatgtcgatcaaaatctttaaatcactttccactataagatgaga 23085092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 23949948 - 23949710
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||| | ||||| ||| ||||  ||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||    
T  23949948 aggaggagactccaacacaataaaattaaaatgatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttg 23949849  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||| ||||||| |||||||||||||| ||             ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23949848 agttgaacattctaactcatcttcagcagcttccggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatcagaa 23949762  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  23949761 atcatgtcgatcaaaatctttgaatcactttccactataagatgagattaat 23949710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 5308892 - 5308654
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||| | ||||| ||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||    
T  5308892 aggaggagactccaacacaagaaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttg 5308793  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||| ||||| ||             ||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  5308792 agttgaacattccaactcatcttcagcagattccggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatcagaa 5308706  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||| ||||||||||||||||||||||| ||||    
T  5308705 atcatgtcgatcaaaatctttgattcactttccactataagatgagagtaat 5308654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 50952516 - 50952754
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| |||  |||  ||||||||| ||| ||||||||| |||| ||||||||||||| |||| || ||||||||||||    
T  50952516 aggaggatactccaacactagaaaattaaaaagatctgtagaaatgcttatattagcgagccaatcagcactcctattttcttcacgccaagtatggttg 50952615  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||| |||||||      ||||       ||||||| ||||||||||||||||||||||||||||||||    
T  50952616 agttgaacattccaactcatcttcagcagcttccggatccggt------aaac-------taaaacatgaatattcccattgaacttgaaattatcagaa 50952702  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||| ||| ||||    
T  50952703 atcatgtcgatcaaaatctttgaatcactttccactataagattagagtaat 50952754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 42677441 - 42677240
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| |||  |||  ||||||||| ||||||||||||| |||| |||||||||||||||||| || ||||||||||||    
T  42677441 aggaggagactccaacactagaaaattaaaaagatctgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatggttg 42677342  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||| ||             ||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  42677341 agttgaacattccaactcatcttcagcagcttccggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatcagaa 42677255  T
Q  201 atcatgtcaatcaaa 215  Q
    |||||||| ||||||    
T  42677254 atcatgtcgatcaaa 42677240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 34553821 - 34554055
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||| | ||||| ||||||||| ||| |||||||||||||||||||||||| |||||| ||||||||||| |  ||||||||||||    
T  34553821 aggaggagactccaacacaagaaaattaaagtgatatgtataaatgtttaaattagcgagtcaatcagcacttctatttccttcacaccaagtatggttg 34553920  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||| ||||||| ||||||| |||| | |||             | ||||| ||||| || |||||||||||  || |  ||||||||||||    
T  34553921 agttgaacattctaactcatcttcagcatcttctggatc-------------cagtgaactaaaatagaaatattcccatcaaattcaaaattatcagaa 34554007  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaa 248  Q
    |||||||| || ||| ||||||||||||||||||||||||||||||||    
T  34554008 atcatgtcgataaaaatctttgaatcactttccactataagatgagaa 34554055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 22065292 - 22065381
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| | ||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  22065292 tgaactaaaataggcacattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 22065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 6293995 - 6293939
Alignment:
Q  190 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 246  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  6293995 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 6293939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 22065199 - 22065279
Alignment:
Q  50 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagc 130  Q
    |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||    
T  22065199 aaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagc 22065279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 34389754 - 34389992
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||||||||| ||| ||||| ||| ||||| ||||||||||||| |||| |||||||||||||||||| ||  |||||||||||    
T  34389754 aggaggagactccaacactaaaaaattaaaatgatatgtaaaaatgcttaaattagcgagccaatcagcactcctatttccttcacgctaagtatggttg 34389853  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    ||||||||||||||| |||| ||||||||||| || |||||||      ||||       ||||||| ||||||||||||||||||||||||||||||||    
T  34389854 agttgaacattccaaatcatcttcagcagctttcggatccggt------aaac-------taaaacaagaatattcccattgaacttgaaattatcagaa 34389940  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  34389941 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 34389992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 36894365 - 36894603
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| ||| ||||  ||| ||||| ||||||||||||| |||| | |||||||||||||||| || ||||||||||||    
T  36894365 aggaggagactccaacactagaaaattaaaatgatctgtataaatgcttaaattagcgagccaatcaacactcctatttccttcacgccaagtatggttg 36894464  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| ||||||| |||||| |||||||      ||||       |||||||||||||||| |||||||||||||||||| ||||    
T  36894465 agttgaacattccaactcatcttcagcaacttccggatccggt------aaac-------taaaacaggaatattcacattgaacttgaaattattagaa 36894551  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  36894552 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 36894603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 47597681 - 47597770
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  47597681 tgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 47597770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 131
Target Start/End: Complemental strand, 4228382 - 4228291
Alignment:
Q  40 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagct 131  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| |||||||||    
T  4228382 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagct 4228291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 43270881 - 43270970
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| ||||| ||||| | ||||||||| ||| |||||||||| |||||  |||| || |||||||  ||||||||||||    
T  43270881 tgaactaaaatagggatatttccattaagcttgaaattgtcaaaaatcatgtcgatcaatatcttagagtcacttttaactataagatga 43270970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 1369413 - 1369357
Alignment:
Q  190 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 246  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  1369413 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 1369357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 28945496 - 28945552
Alignment:
Q  190 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 246  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  28945496 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 28945552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 48619184 - 48618946
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| ||| ||||  ||||||||| ||||||||||||| |||| ||||||| |||||||||| || ||||||||||||    
T  48619184 aggaggagactccaacactagaaaattaaaatgatttgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaagtatggttg 48619085  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||| ||             || || || ||||||||||||||||||||| ||||||||||||||||||    
T  48619084 agttgaacattccaactcatcttcagcagcttccggat-------------acagtaaactaaaacaggaatattcccattaaacttgaaattatcagaa 48618998  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||| ||||    
T  48618997 atcatgtcaatcaaaatctttgaatcactttccactataagataagagtaat 48618946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 8019694 - 8019931
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||||||| | ||||| ||| ||||  |||||| |  ||||||||||||| |||| |||||||||||||||||| || ||||||||| ||    
T  8019694 aggaggagactccagcacaagaaaattaaa-tgatctgtagaattacttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgggtg 8019792  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||| ||||| ||             ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  8019793 agttgaacattccaactcatcttcagcagattccggat-------------acggtaaactaaaacaggaatattcccattgaacttgaaattatcagaa 8019879  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  8019880 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 8019931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 29213677 - 29213907
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttcctt-cgcgtcaagtatggtt 99  Q
    ||||||| |||||| ||| | ||||| ||||||||  ||||||||| |||||||||||||||||| | ||||||| ||| ||| | || |||||||||||    
T  29213677 aggaggagactccaacacaagaaaattaaagtgatctgtagaaatgcttaaattagcgagtcaatcaacactccttttttctttcacgccaagtatggtt 29213776  T
Q  100 gagttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcaga 199  Q
    ||||||||||||||||||||| ||||  |||||| | |||||||||| ||||||             || |||||| |||||||||||||||||||||||    
T  29213777 gagttgaacattccaactcatcttcaatagcttctggatccggtgaagtaaaac-------------agaaatatttccattgaacttgaaattatcaga 29213863  T
Q  200 aatcatgtcaatcaaactctttgaatcactttccactataagat 243  Q
    ||||||||| |||||| ||||||||||||||||||||| |||||    
T  29213864 aatcatgtcgatcaaaatctttgaatcactttccactacaagat 29213907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 24473659 - 24473467
Alignment:
Q  40 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttccgaatc 139  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||         
T  24473659 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc----- 24473565  T
Q  140 cggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactata 239  Q
            | | ||| |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||    
T  24473564 --------tgatacgatgaactaaaataggcatattcccattaaacttgaacttgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaata 24473473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 24468711 - 24468617
Alignment:
Q  40 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 134  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  24468711 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 24468617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 46045886 - 46045830
Alignment:
Q  190 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 246  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  46045886 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 46045830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 13187138 - 13186900
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||| | ||||| ||| ||||| ||||||||| ||||||||||||| |||| |||||||||||||||||| || |||||||| |||    
T  13187138 aggaggagactccaacacaataaaattaaaatgatatgtagaaatgcttaaattagcgagccaatcagcactcctatttccttcacgccaagtatgattg 13187039  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||| | |||||||||||||| ||             ||||| || ||||||||||||||| ||||||||||||||||||||||||    
T  13187038 agttgaacattccaactcgtcttcagcagcttccggat-------------acggtaaactaaaacaggaatatttccattgaacttgaaattatcagaa 13186952  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  13186951 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 13186900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 7305029 - 7305267
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| ||||||||  ||||||||| ||||||||| ||| |||| |||||||||||||||||| || ||||||||||||    
T  7305029 aggaggagactccaacactagaaaattaaagtgatctgtagaaatgcttaaattagagagccaatcagcactcctatttccttcacgccaagtatggttg 7305128  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    ||||||| |||||||||||| |||||||| ||||| |||             |||| || |||||||||||||||| |||||||||||||||||| ||||    
T  7305129 agttgaaaattccaactcatcttcagcaggttccggatc-------------cggtaaagtaaaacaggaatattctcattgaacttgaaattattagaa 7305215  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  7305216 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 7305267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6599169 - 6599017
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||| |||||||||| || ||| ||||||||    
T  6599169 aggaggagactccaacactaaaaaatcaaagtgatatgtagaaatgcttaaattagcgagccaatcagcactcttatttccttcacgccaattatggttg 6599070  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaac 153  Q
    ||||||||||||||| |||| ||||||| |||||| |||||||||| ||||||    
T  6599069 agttgaacattccaattcatcttcagcaacttccggatccggtgaactaaaac 6599017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 40426116 - 40426268
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||||||| | ||||| ||| ||||  ||||||||| |||||||||||||||||| |||||||||||||||||| |  ||| ||||| ||    
T  40426116 aggaggagactccagcacaagaaaattaaaatgatctgtagaaatgcttaaattagcgagtcaatcagcactcctatttccttcacaccaaatatgggtg 40426215  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaac 153  Q
    |||||||||||||||||||| |||||||||||||| || |||| || ||||||    
T  40426216 agttgaacattccaactcatcttcagcagcttccggatacggtaaactaaaac 40426268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 215
Target Start/End: Original strand, 37307265 - 37307444
Alignment:
Q  23 aaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattt 122  Q
    |||| |||||||| |||||||||| |||| ||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||| |    
T  37307265 aaattaaagtgatccgtagaaatgcttaagttaacgagccaatcagcactcctatttccttcacgtcaagtatggttgagttgaacatttcaactcatct 37307364  T
Q  123 tcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaa 215  Q
    || ||| ||| |  |||||||      ||||       |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  37307365 tcggcaactttcagatccggt------aaac-------taaaacaggaatattctcattgaacttgaaattatcagaaatcatgtcgatcaaa 37307444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 40190368 - 40190606
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| | |||| |||||  |||| |||||||| |||| ||||| |||| |||| ||||||||   ||||||||||||||||  ||||||||||||||    
T  40190368 aggaggagattccaacactagtaaattaaagtgatccgtataaatgcttaagttagtgagtcaatctacactcctatttccttcatgtcaagtatggttg 40190467  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||| ||  | |||              |||| | ||||| ||||||||   |||||||||| ||||||||||||    
T  40190468 agttgaacattccaactcatcttcagcagttttgggatc-------------tggtggactaaaataggaatatgttcattgaacttaaaattatcagaa 40190554  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||| ||||    
T  40190555 atcatatcgatcaaaatctttgaatcactttccactataagatgagagtaat 40190606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 17290137 - 17290048
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  17290137 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 17290048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 26381377 - 26381454
Alignment:
Q  171 atattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgagaa 248  Q
    |||||||| ||||| |  ||||| ||||||||||||||||||||| |||||||  | || |||||| | |||||||||    
T  26381377 atattcccgttgaaatgaaaattgtcagaaatcatgtcaatcaaaatctttgagccgctctccacttttagatgagaa 26381454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 17290230 - 17290146
Alignment:
Q  50 aaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 134  Q
    |||||||| || ||||  ||||| ||||||||||| || ||| ||||||||| ||| |||| ||||  |||| ||||||||||||    
T  17290230 aaattagcaagccaatcggcacttctatttccttcacgccaaatatggttgatttgcacatgccaatccattctcagcagcttcc 17290146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 42865896 - 42865840
Alignment:
Q  190 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 246  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  42865896 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 42865840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 18259088 - 18259326
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| |||||| ||||| ||||| ||| ||||  || |||||| ||||||||||||| |||| ||||||| ||||||||||||| || |||||||||    
T  18259088 aggaggagactccaacactagaaaattaaaatgatctgtcgaaatgcttaaattagcgagccaatcagcactcatatttccttcgcgccaggtatggttg 18259187  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    ||||||||||| ||||| || |||||||||||||| |||||||      ||||       ||||||| |||||||||||||||| ||| |||||||||||    
T  18259188 agttgaacatttcaacttatcttcagcagcttccggatccggt------aaac-------taaaacaagaatattcccattgaatttggaattatcagaa 18259274  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  18259275 atcatgtcgatcaaaatctttgaatcactttccactataagatgagagtaat 18259326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 22540460 - 22540222
Alignment:
Q  1 aggaggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttg 100  Q
    ||||||| ||| || ||||| |||||  || ||||  ||||||||| |||||||||||||||||| | |||||||||||||||  || ||||||||||||    
T  22540460 aggaggagacttcaacactagaaaatttaaatgatctgtagaaatgcttaaattagcgagtcaatcaacactcctatttcctttacgccaagtatggttg 22540361  T
Q  101 agttgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaa 200  Q
    |||||||||||||||||||| |||||||||||||| |||| ||      ||||       ||||||||||||||| |||| |||||||||||||||||||    
T  22540360 agttgaacattccaactcatcttcagcagcttccggatccagt------aaac-------taaaacaggaatatttccatcgaacttgaaattatcagaa 22540274  T
Q  201 atcatgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    |||| ||| |||||| |||||||||||||||| |||||||||||||| ||||    
T  22540273 atcacgtcgatcaaaatctttgaatcactttcaactataagatgagagtaat 22540222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 34080690 - 34080925
Alignment:
Q  4 aggaaactccagcactaaaaaatcaaagtgatacgtagaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagt 103  Q
    |||| |||||| ||||| ||||| ||||||||| ||| |||||||||||||||| || |||| | ||||| | |||||||| || |||||||||||||||    
T  34080690 aggagactccaacactataaaattaaagtgatatgtaaaaatgtttaaattagcaagccaatcaacactcatgtttccttcacgccaagtatggttgagt 34080789  T
Q  104 tgaacattccaactcattttcagcagcttccgaatccggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatc 203  Q
    ||||||||||||| ||| |||||||||||| | |||             ||||||| ||||||| |||||||| ||||||||||||| ||||||||||||    
T  34080790 tgaacattccaacccatcttcagcagcttctggatc-------------cggtgaactaaaacaagaatattcgcattgaacttgaatttatcagaaatc 34080876  T
Q  204 atgtcaatcaaactctttgaatcactttccactataagatgagaataat 252  Q
    || || |||||| ||||| ||||||||||||||||||||||||| ||||    
T  34080877 atatccatcaaaatctttaaatcactttccactataagatgagagtaat 34080925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 4560304 - 4560496
Alignment:
Q  40 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttccgaatc 139  Q
    ||||||| | |||||||| ||||||| |||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||         
T  4560304 agaaatgctaaaattagcaagtcaatcagcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc----- 4560398  T
Q  140 cggtgaaataaaacggtgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactata 239  Q
            | | ||| |||| ||||| ||| ||||||||||| |||||||| || |||||||||||||| |||||  |||| || ||||||||||| |||    
T  4560399 --------tgatacgatgaactaaaataggcatattcccattaaacttgaacttttcagaaatcatgtcgatcaatatcttcgagtcactttccacaata 4560490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 18883489 - 18883400
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| ||||||||||| ||||| || || || ||||||||||| |||||  ||||||| ||| |||||||||||||||||    
T  18883489 tgaactaaaatagggatattcccattaaacttaaacttgtccgaaatcatgtcgatcaatatctttgagtcattttccactataagatga 18883400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 134
Target Start/End: Complemental strand, 18934264 - 18934170
Alignment:
Q  40 agaaatgtttaaattagcgagtcaattagcactcctatttccttcgcgtcaagtatggttgagttgaacattccaactcattttcagcagcttcc 134  Q
    ||||||| | |||||||| || ||||  ||||| ||||||||||| || ||||||||||||| ||| |||| ||||  |||| ||||||||||||    
T  18934264 agaaatgctaaaattagcaagccaatcggcacttctatttccttcacgccaagtatggttgatttgcacatgccaatccattctcagcagcttcc 18934170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 18934161 - 18934072
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| |  ||||||||||| |||||||||    
T  18934161 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgggtcactttccacaataagatga 18934072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 14024914 - 14024858
Alignment:
Q  190 aattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatgag 246  Q
    |||| |||| ||||||||| | |||| ||||||| ||||| ||||||||||||||||    
T  14024914 aattttcagtaatcatgtcgaccaaaatctttgagtcactctccactataagatgag 14024858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 1223053 - 1223142
Alignment:
Q  156 tgaaataaaacaggaatattcccattgaacttgaaattatcagaaatcatgtcaatcaaactctttgaatcactttccactataagatga 245  Q
    |||| ||||| ||| | ||||||||| |||||||| |  |||||||||||||| |||||  |||| || ||||||||||| |||||||||    
T  1223053 tgaactaaaataggcacattcccattaaacttgaactcgtcagaaatcatgtcgatcaatatcttcgagtcactttccacaataagatga 1223142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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