View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_47 (Length: 248)
Name: NF1140_low_47
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_47 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 31829206 - 31829447
Alignment:
| Q |
7 |
gatatgaataattataggtatgtttgttacattttgcatagttgttataaaattttgattaattggtatcttattgaattctttgttatgtatacagaat |
106 |
Q |
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| T |
31829206 |
gatatgaatcattataggtatgtttgttacattttgcatagttgttataaaattttgattaattgttatcttattgagttctttcttatgtatacagaat |
31829305 |
T |
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| Q |
107 |
cttttcggcgacttggaatgtagctggacgatcgcctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttcta |
206 |
Q |
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| T |
31829306 |
cttttcggcgacttggaatgtagctggacgatctcctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttcta |
31829405 |
T |
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| Q |
207 |
gggtaagtctctgattatgtaaattgtaatgcataacctctt |
248 |
Q |
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| T |
31829406 |
gggtaagtctctgattatgtaaattgtaatgtataacctctt |
31829447 |
T |
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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 46763545 - 46763638
Alignment:
| Q |
120 |
tggaatgtagctggacgatcgcctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttctagggtaag |
213 |
Q |
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| T |
46763545 |
tggaatgtagctggaagatccccaccaagtaatttgagtgtagatgattggcttcattcctcacctccagctgacatttatgttcttgggtaag |
46763638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 38123225 - 38123154
Alignment:
| Q |
141 |
cctccgagttatttaaatctggaagattggcttcatacatctcctcctgctgatatttatgttctagggtaa |
212 |
Q |
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| T |
38123225 |
cctccaagttatttaagtctggaagattggcttcacatttctccacatgctgatatctatgttcttgggtaa |
38123154 |
T |
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