View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_48 (Length: 248)
Name: NF1140_low_48
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_48 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 31131289 - 31131373
Alignment:
| Q |
15 |
cagccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgcccctt |
99 |
Q |
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| T |
31131289 |
cagccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgcccctt |
31131373 |
T |
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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 31126583 - 31126665
Alignment:
| Q |
17 |
gccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgcccctt |
99 |
Q |
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| T |
31126583 |
gccaacttccaccgccgcatacaatggatagctgatattctccaaaccatcccttcctccaccttcatcttccaccgcgcctt |
31126665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 31077265 - 31077347
Alignment:
| Q |
17 |
gccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgcccctt |
99 |
Q |
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| T |
31077265 |
gccaacttccaccgccgtgtccactggatctccgacatcctccaaaccatcccttcttccaccttcatcctccaccgctcctt |
31077347 |
T |
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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 47209 - 47147
Alignment:
| Q |
186 |
caatacaaactcttatagtatcattctatttcaagaagataccatctcacttgaggtttcaat |
248 |
Q |
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| T |
47209 |
caatacaaactcttatagtatcattctatttcaagaagagaccatctcaattgaggtttcaat |
47147 |
T |
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