View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_5 (Length: 621)
Name: NF1140_low_5
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 31 - 421
Target Start/End: Complemental strand, 39985480 - 39985093
Alignment:
| Q |
31 |
ctgaacctagagtctttctggtttggtgtcatcggtgacccttcctccattgcaaacccatcttcctcttccattgccttgaaattattgaccatgtcct |
130 |
Q |
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| T |
39985480 |
ctgaacctagagtctttctggtttggtgtcatcggtgacccttcctccattgcaaacccatcttcctcttccattgccttgaaattattgaccatgtcct |
39985381 |
T |
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| Q |
131 |
ttagtatacttatcattggggtagcccctattcccagccccacaagtaaaaccacctcatactccctgtagtcttgtgctggcgctccatacggaccatc |
230 |
Q |
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| T |
39985380 |
ttagtatacttatcattggggtagcccctattcccagccccacaagtaaaaccacctcatactccctgtagtcttgtgctggcgctccatacggaccatc |
39985281 |
T |
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| Q |
231 |
aatcaaaactttagggaaagtactgcataatatcataatcataacatacaatcatttttggatatacatataattttttgaaaaagcgttattaattaca |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39985280 |
aatcaaaactttagggaaagtactgcataatatcataatcataacatacaatcatttttggatatacatataattttttgaaaaagcgttgttaattaca |
39985181 |
T |
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| Q |
331 |
aatatgcatgcaggtagaggaaattcatcagcgtttgcatgattattggtttcaatcatcaccacctgtgacatatctgttgggcaacgta |
421 |
Q |
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| T |
39985180 |
aatatgcat---ggtagaggaaattcatcagcgtttgcatgattattggtttcaatcatcaccacctgtgacatatctgttgggcaacgta |
39985093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 97 - 259
Target Start/End: Complemental strand, 44917741 - 44917579
Alignment:
| Q |
97 |
tcttccattgccttgaaattattgaccatgtcctttagtatacttatcattggggtagcccctattcccagccccacaagtaaaaccacctcatactccc |
196 |
Q |
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| T |
44917741 |
tcttccatagccttgaaattattcacaatgtcctttagtatacttatcattggggtagccccaattcctaggcctacaagtaaaactacatcatattgct |
44917642 |
T |
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| Q |
197 |
tgtagtcttgtgctggcgctccatacggaccatcaatcaaaactttagggaaagtactgcata |
259 |
Q |
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| T |
44917641 |
tgtagtcttgtgcaggcgctccataaggaccatcgatcaaaactttagggagagtactgcata |
44917579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 44892338 - 44892185
Alignment:
| Q |
94 |
tcctcttccattgccttgaaattattgaccatgtcctttagtatacttatcattggggtagcccctattcccagccccacaagtaaaaccacctcatact |
193 |
Q |
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||||||||| | ||||||| |||||| | |||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | |
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| T |
44892338 |
tcctcttccttggccttgatattattcaatatgtcctttactatacttatcattggggtagccccaattcccagtcccacaagtaaaaccacctcatatt |
44892239 |
T |
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| Q |
194 |
ccctgtagtcttgtgctggcgctccatacggaccatcaatcaaaactttaggga |
247 |
Q |
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| T |
44892238 |
ttttgtagtcttgtgcaggcgctccataaggaccgtcaaccaaaactttaggga |
44892185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 106 - 257
Target Start/End: Complemental strand, 44900982 - 44900831
Alignment:
| Q |
106 |
gccttgaaattattgaccatgtcctttagtatacttatcattggggtagcccctattcccagccccacaagtaaaaccacctcatactccctgtagtctt |
205 |
Q |
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|||||| ||||||| | |||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||| | ||||||| | |
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| T |
44900982 |
gccttggaattattcaaaatgtcctttattatacttatcattggggtagccccaattcccaggccaacaagtaaaaccacctcgtactgcttgtagtcct |
44900883 |
T |
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| Q |
206 |
gtgctggcgctccatacggaccatcaatcaaaactttagggaaagtactgca |
257 |
Q |
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|||| ||||||||||| ||||| |||||| |||||||||| ||||||||| |
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| T |
44900882 |
gtgcaggcgctccataaggaccgtcaatccgaactttagggcgagtactgca |
44900831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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