View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1140_low_6 (Length: 600)
Name: NF1140_low_6
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1140_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 3e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 326 - 557
Target Start/End: Complemental strand, 43664951 - 43664718
Alignment:
| Q |
326 |
gatcatattgtaatggaaatgaaaagtttaattaattttgggacacattttccgcaaataggtatataggttacatttccttnnnnnnnnn--ggtatat |
423 |
Q |
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| T |
43664951 |
gatcatattgtaatggaaatgaaaagtttaattaattttgggacacattttccgcaaataggtatataggttacatttcctaaaaaaaaaaaaggtatat |
43664852 |
T |
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| Q |
424 |
aggttacataaatagttgatcgttgctatggtgtttactctggactcaagcaccctgcactcgccgctatcgttctttggatgtctttctccggtcgttc |
523 |
Q |
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| T |
43664851 |
aggttacataaatagttgatcgttgctatggtgtttactctggactcaggcaccctgcactcgccgctatcgttcttaggatgtctttctccggtcgttc |
43664752 |
T |
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| Q |
524 |
accactttgcgcctcacactgtccttgtctctgc |
557 |
Q |
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| T |
43664751 |
accactttgcgcctcacactgtccttgtctctgc |
43664718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 43665194 - 43665084
Alignment:
| Q |
83 |
gtaaatgagaaatcattggttcacgataattttatttgactattttacacaatttaaaaaatatgtatatatttgtatnnnnnnnngcgaataaaataaa |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43665194 |
gtaaatgagaaatcattggttcacgataattttatttgactattttacacaatttaaaaaatatgtatatatttgtataaaaaaaagcgaataaaataaa |
43665095 |
T |
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| Q |
183 |
tgagagatgag |
193 |
Q |
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| T |
43665094 |
tgagagatgag |
43665084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 43665257 - 43665221
Alignment:
| Q |
27 |
cacctactgtgatttcaaacatagtattaatcatttc |
63 |
Q |
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| T |
43665257 |
cacctactgtgatttcaaacatagtattaatcatttc |
43665221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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