View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1140_low_8 (Length: 540)

Name: NF1140_low_8
Description: NF1140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1140_low_8
NF1140_low_8
[»] chr8 (1 HSPs)
chr8 (1-512)||(455783-456293)
[»] chr2 (4 HSPs)
chr2 (4-64)||(6599188-6599248)
chr2 (1-51)||(13187153-13187203)
chr2 (5-51)||(40426050-40426096)
chr2 (1-62)||(37307166-37307227)
[»] chr1 (3 HSPs)
chr1 (1-63)||(34553743-34553805)
chr1 (5-51)||(23949968-23950014)
chr1 (1-51)||(42677457-42677507)
[»] chr7 (3 HSPs)
chr7 (1-51)||(8019628-8019678)
chr7 (5-63)||(29213599-29213657)
chr7 (1-51)||(48619200-48619250)
[»] chr5 (1 HSPs)
chr5 (5-51)||(18259022-18259068)
[»] chr4 (2 HSPs)
chr4 (1-51)||(34389688-34389738)
chr4 (1-51)||(36894299-36894349)
[»] chr3 (1 HSPs)
chr3 (1-51)||(54347001-54347051)


Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Complemental strand, 456293 - 455783
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgattatctttttagtttggnnnnnnngggctttgtcttctcttgtaccnnnnnn 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||          
T  456293 atcctttttgattatttatccgggacttgcatgcctatgaatgtttgattatctttttagtttggtttttttgggctttgccttctcttgtaccaaaaaa 456194  T
Q  101 nnnntggaaatattttaaagtatttcgtagcatttgtttttatctaatacattaatt-cattttctctcaataaaatatgacatttatttttcttcatgt 199  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||    
T  456193 aaattggaaatattttaaagtatttcgtagcatttgtttttatctaatacattaatttcattttctctcaataaaat--gacatttatttttcttcatgt 456096  T
Q  200 tatgactgttttttcttatacagttttgacatttagcccaagtataaaagaaaaacactcgactatatacttaattgtcattatttttattccaaagggt 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  456095 tatgactgttttttcttatacagttttgacatttagcccaagtataaaagaaaaacactcgattatatacttaattgtcattatttttattccaaagggt 455996  T
Q  300 aagaaagaaggtataatgtgtgatcggtggggtgcatgctgttttgctgcagaaactttttgatcgtctcgtatatgcacaaatgatagccaacgatccc 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  455995 aagaaagaaggtataatgtgtgatcggtggggtgcatgctgttttgctgcagaaattttttgatcgtctcgtatatgcacaaatgatagccaacgatccc 455896  T
Q  400 aatgtaaatgaatgtacgggggcaatatattatatatgcatgacaagagagaccaagacgagttttatcttcttaactagtgctctaagagatgcataac 499  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  455895 aatgtaaatgaatgtacgggggcaatatattatatatgcatgataagagagaccaagacgagttttatcttcttaactagtgctctacgagacgcataac 455796  T
Q  500 cctaaagtttttt 512  Q
    |||||||||||||    
T  455795 cctaaagtttttt 455783  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 6599188 - 6599248
Alignment:
Q  4 ctttttgattatttatccggggcttgcatgcctatgaatgtttgattatctttttagtttg 64  Q
    ||||||||| |||||||||||||||||||||||| ||||||| | ||| ||||||||||||    
T  6599188 ctttttgatgatttatccggggcttgcatgcctaagaatgttcgtttagctttttagtttg 6599248  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 13187153 - 13187203
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||||||| |||||| ||||||||||||||||| ||||||| |||||    
T  13187153 atcctttttgatgatttattcggggcttgcatgcctaggaatgttcgatta 13187203  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 40426096 - 40426050
Alignment:
Q  5 tttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||| |||||||||||||||||||||||| ||||||| |||||    
T  40426096 tttttgatgatttatccggggcttgcatgcctaggaatgttcgatta 40426050  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37307227 - 37307166
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgattatctttttagtt 62  Q
    |||||||| ||| |||||||| || |||||||||||| |||| || ||||| ||||||||||    
T  37307227 atccttttagatgatttatccaggacttgcatgcctaggaatcttcgattagctttttagtt 37307166  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 34553805 - 34553743
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgattatctttttagttt 63  Q
    |||||||||||| |||||||| | ||||||||||||||||||||| ||||| ||| |||||||    
T  34553805 atcctttttgatgatttatccagagcttgcatgcctatgaatgttcgattagcttgttagttt 34553743  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 23949968 - 23950014
Alignment:
Q  5 tttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||| |||||||||||| ||||||||||| ||||||| |||||    
T  23949968 tttttgatgatttatccggggtttgcatgcctaggaatgttcgatta 23950014  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42677457 - 42677507
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||||||| ||||||| |||||||||||||||| |||| || |||||    
T  42677457 atcctttttgatgatttatctggggcttgcatgcctaggaatattcgatta 42677507  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8019678 - 8019628
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||| |||||    
T  8019678 atcctttttgatgatttatccgggacttgcatgcctaagaatgttcgatta 8019628  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 29213657 - 29213599
Alignment:
Q  5 tttttgattatttatccggggcttgcatgcctatgaatgtttgattatctttttagttt 63  Q
    |||||||| |||||||| ||||||||||||||| ||||||| ||||| ||| |||||||    
T  29213657 tttttgatgatttatcctgggcttgcatgcctaggaatgttcgattagcttgttagttt 29213599  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 48619200 - 48619250
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||||||| ||||||||||||||||||||| || ||||||| |||||    
T  48619200 atcctttttgatgatttatccggggcttgcatgcttaggaatgttcgatta 48619250  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 18259068 - 18259022
Alignment:
Q  5 tttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||| |||||||||||||||||||||||| ||||||| |||||    
T  18259068 tttttgatgatttatccggggcttgcatgcctaggaatgttcgatta 18259022  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34389738 - 34389688
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||| |||||    
T  34389738 atcctttttgatgatttatccggggcttacatgcctaggaatgttcgatta 34389688  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 36894349 - 36894299
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||||||| |||||||||| ||||||||||||| ||||||| |||||    
T  36894349 atcctttttgatgatttatccggagcttgcatgcctaggaatgttcgatta 36894299  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 54347001 - 54347051
Alignment:
Q  1 atcctttttgattatttatccggggcttgcatgcctatgaatgtttgatta 51  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||| |||||    
T  54347001 atcctttttgatgatttatccggggcttacatgcctaggaatgttcgatta 54347051  T

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