View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11410_high_1 (Length: 697)
Name: NF11410_high_1
Description: NF11410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11410_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 48695530 - 48695200
Alignment:
| Q |
19 |
cctttggctttgtttgttgttggacagtagaagtgggactccaaggattcaggctcattatgcctctgctgctactgcttaaaagcctctttaatgactt |
118 |
Q |
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| T |
48695530 |
cctttggctttgtttgttgttggacagtagaagtgggactccaaggattcaggctcattatgcctctgctgctactgcttaaaagcctctttaatgactt |
48695431 |
T |
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| Q |
119 |
taatctcccttccgccgaagataagggtgatgatgatgaagtagtggcctcacactcattgggtatatcaatccttaacattccatttccttcatcatca |
218 |
Q |
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| T |
48695430 |
taatctcccttccgccgaagataagggtgatgatgatgaagtagtggcctcacactcattgggtatatcaatccttaacattccatttccttcatcatca |
48695331 |
T |
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| Q |
219 |
gctctgctgttgttatttatagtattatcaccatcggatgatgatgaagaagtgttttgttccgaagtagtagatgaag---aagaggttatttggttgt |
315 |
Q |
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| T |
48695330 |
gctctgctgttgttatttatagtattatcaccatcggatgatgatgaagaagtgttttgttccgaagtagtagatgaagaagaagaggttatttggttgt |
48695231 |
T |
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| Q |
316 |
ggttgccccaaatcaagacatttgtgggaaa |
346 |
Q |
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| T |
48695230 |
ggttgccccaaatcaagacatttgtgggaaa |
48695200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 364 - 693
Target Start/End: Complemental strand, 48695176 - 48694844
Alignment:
| Q |
364 |
atgttgatgattcta---cttctactactactactgaggagggaggaggagttgcagcaagtgttgtcctgcaaagagggcaggttgagtgggaatggaa |
460 |
Q |
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| T |
48695176 |
atgttgatgattctatgtctactactactactactgaggagggaggaggagttgcagcaagtgttgtcctgcaaagagggcaggttgagtgggaatggaa |
48695077 |
T |
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| Q |
461 |
ccacatatcaatgcaatctatgtgaaacatgtgattgcatttaggcaaaaccctcaccttttctccttcaaccacttccgacaggcaaactgaacactcc |
560 |
Q |
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| T |
48695076 |
ccacatatcaatgcaatctatgtgaaacatgtgattgcatttaggcaaaaccctcaccttttctccttcaaccacttccgacaggcaaactgaacactcc |
48694977 |
T |
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| Q |
561 |
aaatcaaaaccatcttcttttgaattgaatattgatatgggtagggagttgagtacggaaggatcaagaccaccaccctcttgaccactacgccggcgcc |
660 |
Q |
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| T |
48694976 |
aaatcaaaaccatcttcttttgaattgaatattgatatgggtagggagttgagtacggaaggatcaagaccaccaccctcttgaccactacgccggcgcc |
48694877 |
T |
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| Q |
661 |
ttcgggattgggaattgttgtctctgctcctcc |
693 |
Q |
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| T |
48694876 |
ttcgggattgggaattgttgtcactgctcctcc |
48694844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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