View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11410_low_2 (Length: 604)
Name: NF11410_low_2
Description: NF11410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11410_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Original strand, 44566105 - 44566673
Alignment:
| Q |
1 |
catctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44566105 |
catctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggacttt-------------------tcctctagttggcacg |
44566185 |
T |
|
| Q |
101 |
tgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgtt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566186 |
tgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgtt |
44566285 |
T |
|
| Q |
201 |
gcagtgtgctgatatattttattatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566286 |
gcagtgtgctgatatattttattatatattgctttttgcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtct |
44566385 |
T |
|
| Q |
301 |
aatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566386 |
aatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatattattttctttacctaa |
44566485 |
T |
|
| Q |
401 |
tttacaggtgcctttgggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgataca |
500 |
Q |
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| T |
44566486 |
tttacaggtgcctttgggtttggcagtcacatggacatttgcttttttgctgactgaaaacggccggatgaaacattgtcaagttaatacttctgataca |
44566585 |
T |
|
| Q |
501 |
atgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattggaaaatggctattgtgatgtgtg |
588 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44566586 |
atgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattggaaaatggctattgtgatgtgtg |
44566673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 36033092 - 36032639
Alignment:
| Q |
1 |
catctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| |
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| T |
36033092 |
catctcaattttcaggtttatcaatcctgtggttgtatccccaaccattgctgcagttggactttcattttatggttatggttttcctcttgttggcaca |
36032993 |
T |
|
| Q |
101 |
tgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatggtattaatcgtt |
200 |
Q |
| |
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||| ||||||| |||||| |||| ||||||||| |||||||||||| |||||||| |||||||||| ||| ||||||||||||||||| ||| | |
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| T |
36032992 |
tgtattgagattggtgcaatacaaatattagtggttattgttttttcccttgtaag-----tgaattcagactcccactttgtctatggtattgatcatc |
36032898 |
T |
|
| Q |
201 |
gcagtgtgctgatatattttattatatattgcttttggcagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagtct |
300 |
Q |
| |
|
| | ||||| | | ||| | ||||||||| ||||||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||| |
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| T |
36032897 |
ac---gcgctgacttcatccattttttattgctttctgcagtatcttcgtaagatatctgttcttggacaccgcatatttctaatatatgcagtaagtgc |
36032801 |
T |
|
| Q |
301 |
aatgccacattattcttctgagttgctcttcagaagagaaaataaatttctgtggtgtaaaaaatgatttttgttaagtgatat----tattttctttac |
396 |
Q |
| |
|
||||||| | ||| |||| ||||| |||| || || ||||||||||||||| |||||| ||||||||| ||||||||||| | |||||| ||||| |
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| T |
36032800 |
aatgccataatatccttccgagttactctatagcagtgaaaataaatttctgctgtgtaacaaatgatttctgttaagtgatgttatatattttttttac |
36032701 |
T |
|
| Q |
397 |
ctaatttacaggtgcctttgggtttggcagtcacatggacatttgcttttttgctgactgaa |
458 |
Q |
| |
|
||||||| ||||| ||||||||||||||| | |||||| || ||||||| |||||||||||| |
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|
| T |
36032700 |
ctaatttgcaggttcctttgggtttggcaattacatgggcagttgctttcttgctgactgaa |
36032639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 466 - 588
Target Start/End: Complemental strand, 36032553 - 36032431
Alignment:
| Q |
466 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
565 |
Q |
| |
|
|||||||| |||||| |||| ||||||| || |||| | |||| |||||||||||| ||||||||||||| ||||||||||||||||||| ||| | || |
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| T |
36032553 |
ggatgaaatattgtcgagttgatacttcgcatgcaatcaaatcatccccatggtttaaatttccctatccattgcaatggggtactcctgtcttccactg |
36032454 |
T |
|
| Q |
566 |
gaaaatggctattgtgatgtgtg |
588 |
Q |
| |
|
|||||||||| |||||||||||| |
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|
| T |
36032453 |
gaaaatggctcttgtgatgtgtg |
36032431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 20121896 - 20122045
Alignment:
| Q |
10 |
tttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgag |
109 |
Q |
| |
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||||||| | |||||||| || ||||||||| |||| ||||||||||||||||||||||| | || || || || || |||| || || ||||||||| |
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| T |
20121896 |
tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgag |
20121995 |
T |
|
| Q |
110 |
atcggtgcagtacagatattagtgtttattgttttttgtcttgtaagttt |
159 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| | ||||| |||||| |
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| T |
20121996 |
attggtgcagtacagatattagtggttattgttttctctcttggaagttt |
20122045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 20122158 - 20122217
Alignment:
| Q |
239 |
cagtatcttcgtaagatatctgtttttggacatcacatatttcagatatatgcagtaagt |
298 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||| || || ||||||||| |
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|
| T |
20122158 |
cagtatcttcgtaagatatctgttcttggacatcgcatatttctaatctacgcagtaagt |
20122217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 466 - 588
Target Start/End: Original strand, 20122450 - 20122572
Alignment:
| Q |
466 |
ggatgaaacattgtcaagttaatacttctgatacaatgacatcacccccatggtttagatttccctatccactgcaatggggtactcctgtgttcaattg |
565 |
Q |
| |
|
||||||| ||||||| ||| |||||||| || || ||| ||| | ||||||||||||||||||||||| | ||||||||| |||||| || | || |
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| T |
20122450 |
ggatgaagcattgtcgggttgatacttctcatgcattgaaatcctctccatggtttagatttccctatccgttacaatggggtgttcctgtctttcactg |
20122549 |
T |
|
| Q |
566 |
gaaaatggctattgtgatgtgtg |
588 |
Q |
| |
|
|||||||||| |||| ||||||| |
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|
| T |
20122550 |
gaaaatggctcttgtaatgtgtg |
20122572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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