View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11410_low_3 (Length: 501)

Name: NF11410_low_3
Description: NF11410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11410_low_3
NF11410_low_3
[»] chr2 (7 HSPs)
chr2 (20-486)||(16131676-16132142)
chr2 (423-489)||(21195687-21195753)
chr2 (57-177)||(14490053-14490178)
chr2 (424-489)||(11062360-11062425)
chr2 (424-489)||(13803495-13803560)
chr2 (420-489)||(30808658-30808727)
chr2 (424-489)||(18259730-18259795)
[»] chr8 (6 HSPs)
chr8 (20-423)||(21232397-21232800)
chr8 (424-489)||(11819776-11819841)
chr8 (424-489)||(27750730-27750795)
chr8 (424-489)||(33727884-33727949)
chr8 (419-489)||(19703498-19703568)
chr8 (421-489)||(5264541-5264609)
[»] chr6 (2 HSPs)
chr6 (72-192)||(10752442-10752563)
chr6 (420-489)||(14199958-14200027)
[»] chr1 (5 HSPs)
chr1 (20-75)||(37668308-37668363)
chr1 (423-489)||(6122793-6122859)
chr1 (422-489)||(4566546-4566613)
chr1 (423-488)||(36371469-36371534)
chr1 (424-488)||(31794276-31794340)
[»] chr3 (4 HSPs)
chr3 (424-489)||(8170672-8170737)
chr3 (424-484)||(19341801-19341861)
chr3 (424-486)||(8075141-8075203)
chr3 (423-489)||(27093372-27093438)
[»] scaffold0413 (1 HSPs)
scaffold0413 (136-192)||(8038-8093)
[»] chr7 (2 HSPs)
chr7 (424-489)||(18363696-18363761)
chr7 (423-489)||(33181221-33181287)
[»] chr5 (1 HSPs)
chr5 (424-489)||(25627057-25627122)
[»] chr4 (3 HSPs)
chr4 (436-489)||(8030215-8030268)
chr4 (424-489)||(31826609-31826674)
chr4 (424-489)||(46545711-46545776)


Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 486
Target Start/End: Complemental strand, 16132142 - 16131676
Alignment:
Q  20 gtataaaccagttttcaattttgacattgtcttattaatactacacgtttttcttgcctagttgatgccactaccgccatatttccttctcccttgcgcc 119  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16132142 gtataaaccagttttcagttttgacattgtcttattaatactacacgtttttcttgcctagttgatgccactaccgccatatttccttctcccttgcgcc 16132043  T
Q  120 actatgtttcttgaattgctaggtcaatgaagttgattattttggtttctaaaaactaggcacatattagctatgtatttcaattcactcaatcggttgg 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16132042 actatgtttcttgaattgctaggtcaatgaagttgattattt-ggttcctaaaaactaggcacatattagctatgtatttcaattcactcaatcggttgg 16131944  T
Q  220 ttttctcactcattcgatttcacaggtcctctcctaccaaattccattgcattagttttgtcacttaattgctatgtgttatactagctatctcctataa 319  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16131943 ttttctcactcattcgatttcacaggtcctctcctctcaaattccattgcattagttttgtcacttaattgctatgtgttatactagctatctcctataa 16131844  T
Q  320 ctctttgcatcaatttctctcccacttagctaaaccacacgatgaccattacttgttccatttctaccattgttaatcttgatatactaataaaaatgat 419  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16131843 ttctttgcatcaatttctctcccacttagctaaaccacacgatgaccattacttgttccatttctaccattgttaatcttgatatactaagaaaaatgat 16131744  T
Q  420 tct-aaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggt 486  Q
    ||| ||||||||||| ||||| | |||| ||||||||||||||| |||| ||||||||||||||||||    
T  16131743 tctaaaacccatttgggttgctccagtggtataggcttgaaactggagagtgtgctcctcctcaaggt 16131676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 21195753 - 21195687
Alignment:
Q  423 aaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    ||||||||||| |||||||||||| |||||||||| |||||| || |||||||||||||||||||||    
T  21195753 aaacccatttgggttgccctagtggtataggcttggaacttgggagtgtgctcctcctcaaggtctc 21195687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 177
Target Start/End: Original strand, 14490053 - 14490178
Alignment:
Q  57 atactacacgttttt----cttgcctagttgatgccactaccgccatatttccttctccc-ttgcgccactatgtttct-tgaattgctaggtcaatgaa 150  Q
    |||||||||||||||    |||||||| |||||||||||||| |||||||| |||||||| ||  || |||||| |||  ||||||||||||||||||||    
T  14490053 atactacacgttttttatccttgcctaattgatgccactaccaccatattttcttctccccttatgcaactatggttccgtgaattgctaggtcaatgaa 14490152  T
Q  151 gttgattattttggtttctaaaaacta 177  Q
     ||| ||| ||||||| ||||||||||    
T  14490153 attggtta-tttggttcctaaaaacta 14490178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 11062360 - 11062425
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||| ||| |||| ||||||||||| |||||| |||||| || |||||| ||||||||||||||    
T  11062360 aacccacttgggttggcctagtgatattggcttggaacttgggagtgtgcttctcctcaaggtctc 11062425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 13803495 - 13803560
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||||||| ||||  |||||||||| ||||||| ||||  || |||||||||||||||||||||    
T  13803495 aacccatttgggttgatctagtgatattggcttgagacttaggagtgtgctcctcctcaaggtctc 13803560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 30808727 - 30808658
Alignment:
Q  420 tctaaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||||||| ||| ||||  || ||||||| ||||||| || ||||||| |||||||||||||||||||    
T  30808727 tctaaacccacttgggttggtctggtgatattggcttgagacctgagaatatgctcctcctcaaggtctc 30808658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 18259730 - 18259795
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    ||||||||||||||| ||| ||| ||| ||||||| | |||||| ||||||||||||  |||||||    
T  18259730 aacccatttgagttggcctggtggtattggcttgagatttgagagtgtgctcctcctataggtctc 18259795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 423
Target Start/End: Complemental strand, 21232800 - 21232397
Alignment:
Q  20 gtataaaccagttttcaattttgacattgtcttattaatactacacgtttttcttgcctagttgatgccactaccgccatatttccttctcccttgcgcc 119  Q
    |||||||| |||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  21232800 gtataaacaagttttcagttttgatattgtcttattaatactacacgtttttcttacctagttgatgccactaccgccatatttccttctcccttgtgcc 21232701  T
Q  120 actatgtttcttgaattgctaggtcaatgaagttgattattttggtttctaaaaactaggcacatattagctatgtatttcaattcactca--atcggtt 217  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||| |||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  21232700 actatgtttcttgaattgctaggtcaatgaagttagttattt-ggttcctaaaaactaggcacatattagctatgtatttcaattcactcacaatcggtt 21232602  T
Q  218 ggttttctcactcattcgatttcacaggtcctctcctaccaaattccattgcattagttttgtcacttaattgctatgtgttatactagctatctcctat 317  Q
    ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||    
T  21232601 ggttt-ctcactcattcgatttcacaggtcctctcctctcaaattccattgcattagttttgtcacttatttgttatgtgttctactagccatctcctat 21232503  T
Q  318 aactctttgcatcaatttctctcccacttagctaaaccacacgatgaccattacttgttccatttctaccattgttaatcttgatatactaataaaaatg 417  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21232502 aattctttgcatcaatttctctcccacttagctaaaccacacgatgaccattacttgttccatttctaccattgttaatcttgatatactaagaaaaatg 21232403  T
Q  418 attcta 423  Q
    ||||||    
T  21232402 attcta 21232397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 11819776 - 11819841
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||||||| |||||||||||| ||||||||||  ||||| || |||||||||||||||||||||    
T  11819776 aacccatttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctc 11819841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 27750730 - 27750795
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||||||| |||||||| ||| ||||||||||  ||||| || |||||||||||||||||||||    
T  27750730 aacccatttgggttgccctcgtggtataggcttgggacttgggagtgtgctcctcctcaaggtctc 27750795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 489
Target Start/End: Complemental strand, 33727949 - 33727884
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||||||| |||||||||||| |||||| |||| |||||  | |||||||||||||||||||||    
T  33727949 aacccatttgggttgccctagtggtataggtttgagacttggaagtgtgctcctcctcaaggtctc 33727884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 489
Target Start/End: Complemental strand, 19703568 - 19703498
Alignment:
Q  419 ttctaaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    ||||||||||| ||| |||| ||||||| ||| ||||||  || ||||| |||||||||||||||||||||    
T  19703568 ttctaaacccacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctc 19703498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 5264541 - 5264609
Alignment:
Q  421 ctaaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    ||||||||| ||| |||| ||||||| ||| |||||| ||| || |||||||||||||||| |||||||    
T  5264541 ctaaacccacttgggttggcctagtggtattggcttggaacctgggaatgtgctcctcctcgaggtctc 5264609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 10752563 - 10752442
Alignment:
Q  72 cttgcctagttgatgccactaccgccatatttccttctccc-ttgcgccactatgtttct-tgaattgctaggtcaatgaagttgattattttggtttct 169  Q
    |||||||| |||||||||||||| ||||||||   |||||| ||  ||||||||| |||  |||||||||||||||||||| ||| |||||| |||| ||    
T  10752563 cttgcctaattgatgccactaccaccatatttttctctccccttatgccactatggttccgtgaattgctaggtcaatgaaattggttattt-ggttcct 10752465  T
Q  170 aaaaactaggcacatattagcta 192  Q
    |||||||||||||||||||||||    
T  10752464 aaaaactaggcacatattagcta 10752442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 420 - 489
Target Start/End: Complemental strand, 14200027 - 14199958
Alignment:
Q  420 tctaaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||||||||||| ||||| |||| | ||||||||||| ||||| || |||||||||||||||||||||    
T  14200027 tctaaacccatttgggttgctctagaggtataggcttgagacttgggagtgtgctcctcctcaaggtctc 14199958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 37668363 - 37668308
Alignment:
Q  20 gtataaaccagttttcaattttgacattgtcttattaatactacacgtttttcttg 75  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  37668363 gtataaaccagttttcagttttgacattgtcttattaataccacacgtttttcttg 37668308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 489
Target Start/End: Original strand, 6122793 - 6122859
Alignment:
Q  423 aaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    ||||||||||| |||||||||||| ||||||||||  ||||| || |||||||||||||||||||||    
T  6122793 aaacccatttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctc 6122859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 489
Target Start/End: Original strand, 4566546 - 4566613
Alignment:
Q  422 taaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||||| ||| |||| ||||||||||| |||||| ||| || || |||||||||||||| ||||||    
T  4566546 taaacccacttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctc 4566613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 423 - 488
Target Start/End: Original strand, 36371469 - 36371534
Alignment:
Q  423 aaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtct 488  Q
    ||||||| ||| |||| ||||||| ||| |||||| ||| || || ||||||||||||||||||||    
T  36371469 aaacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtct 36371534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 31794340 - 31794276
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtct 488  Q
    |||||| ||| |||| ||||||| ||| ||||||  ||||| || ||||||||||||||||||||    
T  31794340 aacccacttgggttggcctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtct 31794276  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 8170672 - 8170737
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||||||| |||| ||||||| ||| ||||||||||||| || ||||||||| |||||||||||    
T  8170672 aacccatttgggttggcctagtggtattggcttgaaacttgggagtgtgctcctactcaaggtctc 8170737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 424 - 484
Target Start/End: Original strand, 19341801 - 19341861
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaag 484  Q
    |||||||||| |||||||||||| ||||| ||||| ||||| || ||||||||||||||||    
T  19341801 aacccatttgggttgccctagtggtatagacttgagacttgggagtgtgctcctcctcaag 19341861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 486
Target Start/End: Complemental strand, 8075203 - 8075141
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggt 486  Q
    |||| ||||| |||||||||||| ||||||||||  ||||| || ||||||||||||||||||    
T  8075203 aacctatttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggt 8075141  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 27093438 - 27093372
Alignment:
Q  423 aaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    ||||||| ||| |||| ||||||| ||| |||||| |||||| || |||||||||||||||||||||    
T  27093438 aaacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctc 27093372  T

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Target: scaffold0413 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 8038 - 8093
Alignment:
Q  136 tgctaggtcaatgaagttgattattttggtttctaaaaactaggcacatattagcta 192  Q
    ||||||||||||||| ||| |||||| |||| |||||||||||||||||||||||||    
T  8038 tgctaggtcaatgaaattggttattt-ggttcctaaaaactaggcacatattagcta 8093  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 18363696 - 18363761
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||| ||| |||| ||||||| ||||||||||| | ||| || |||||||||||||||||||||    
T  18363696 aacccacttgggttggcctagtggtataggcttgagatttgggagtgtgctcctcctcaaggtctc 18363761  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 423 - 489
Target Start/End: Complemental strand, 33181287 - 33181221
Alignment:
Q  423 aaacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    ||||||||||| |||||||||||| ||||||||||  ||||| || ||||||||  |||||| ||||    
T  33181287 aaacccatttgggttgccctagtggtataggcttgggacttgggagtgtgctccaactcaagatctc 33181221  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 25627057 - 25627122
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||| ||| |||| ||||||| ||| |||||| |||||| || |||||||||||||||||||||    
T  25627057 aacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctc 25627122  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 489
Target Start/End: Complemental strand, 8030268 - 8030215
Alignment:
Q  436 ttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    ||||||||||| ||||||||||  ||||| || |||||||||||||||||||||    
T  8030268 ttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctc 8030215  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 31826609 - 31826674
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||| ||| |||||||||||| ||||||||||  | ||| || |||||||||||||||||||||    
T  31826609 aacccacttgggttgccctagtggtataggcttgggatttgcgagtgtgctcctcctcaaggtctc 31826674  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 489
Target Start/End: Original strand, 46545711 - 46545776
Alignment:
Q  424 aacccatttgagttgccctagtgatataggcttgaaacttgagaatgtgctcctcctcaaggtctc 489  Q
    |||||| ||| |||| ||||||| ||| ||||||| || ||||| |||||||||||||||| ||||    
T  46545711 aacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctc 46545776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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