View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11410_low_6 (Length: 248)
Name: NF11410_low_6
Description: NF11410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11410_low_6 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 45746878 - 45746632
Alignment:
| Q |
1 |
tagtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746878 |
tagtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcag |
45746779 |
T |
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| Q |
101 |
aatcgtcgaacccaaatgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcactcgcgatctgagttgtggcattaaggtttttaat |
200 |
Q |
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| T |
45746778 |
aatcgtcgaacccaaatgaaggtgaatgttaaatatcatgttccattttcttttaaaaatctgcagtcgcgatctgagttgcggcattaaggtttttaat |
45746679 |
T |
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| Q |
201 |
gtctccacaacaaggttgcctaagctgcttttgtctctgcttctcca |
247 |
Q |
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| T |
45746678 |
gtctccacaacaaggttgcctaagccgcttttgtttgtgattctcca |
45746632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 10082 - 9960
Alignment:
| Q |
1 |
tagtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcag |
100 |
Q |
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||||||||||||||||||||| ||||||||||| || ||||| || |||||||||| |||||||||| ||| ||||||||||| |||||||||||| |
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| T |
10082 |
tagtttcttcaaggagtgtccacatcctgatgagaagcaaagaactgaccttagcaagaagcttggcttggcaaacaaacaagtcaagttctggtttcag |
9983 |
T |
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| Q |
101 |
aatcgtcgaacccaaatgaaggt |
123 |
Q |
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| T |
9982 |
aatcggcgaactcagatgaaggt |
9960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 12327179 - 12327055
Alignment:
| Q |
1 |
tagtttcttcaaggagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcag |
100 |
Q |
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|||||| || |||||||||||||| || ||||| |||||||| ||||| |||||||| || ||| | ||||||| | |||||| || || ||||| || |
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| T |
12327179 |
tagtttgtttaaggagtgtcctcacccagatgagaaacaaagattggaacttagcaaaaggctttgtttggaaacaagacaagttaagttttggttccaa |
12327080 |
T |
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| Q |
101 |
aatcgtcgaacccaaatgaaggtga |
125 |
Q |
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| T |
12327079 |
aatcgaagaacacaaatgaaggtga |
12327055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 28597614 - 28597652
Alignment:
| Q |
8 |
ttcaaggagtgtcctcatcctgatgaaaaacaaaggttg |
46 |
Q |
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| T |
28597614 |
ttcaaggagtgtcctcatcctgatgagaaacaaaggttg |
28597652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 28599429 - 28599320
Alignment:
| Q |
14 |
gagtgtcctcatcctgatgaaaaacaaaggttggatcttagcaagagacttggcttggaaaataaacaagtcaaattctggtttcagaatcgtcgaaccc |
113 |
Q |
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| T |
28599429 |
gagtgtcctcatcctgatgaaaaacaaagacttgaacttagcaaaaggctttgtttggaaacaagacaagtcaagttttggttccaaaatagaagaacac |
28599330 |
T |
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| Q |
114 |
aaatgaaggt |
123 |
Q |
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| T |
28599329 |
aaatgaaggt |
28599320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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