View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11410_low_8 (Length: 206)
Name: NF11410_low_8
Description: NF11410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11410_low_8 |
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| [»] scaffold0182 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 9 - 194
Target Start/End: Complemental strand, 26616553 - 26616368
Alignment:
| Q |
9 |
agcagagaaagaagctccttccattggtgtagtagggtagtatagataggatggtccagcttgtatgcgatgtggttggggtgttgaaaatgaacccctt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26616553 |
agcagagaaagaagctccttccattggtgtagtagggtagtatagataggatggtccagcttgtatgcgatgtggttggggtgttgaaaatgtacccctt |
26616454 |
T |
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| Q |
109 |
ggtgctgctgcttgcatagaatagccataataatatggtgaacccattgttgaagatgatggtccataaagttgttgatagtattg |
194 |
Q |
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| T |
26616453 |
ggtgctgctgcttgcatagaatagccataataatatggtgaacccattgttgaagatgatggtccataaagttgttgatagtattg |
26616368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 32630 - 32775
Alignment:
| Q |
49 |
tatagataggatggtccagcttgtatgcgatgtggttggggtgttgaaaatgaaccccttggtgctgctgcttgcatagaatagccataataatatggtg |
148 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32630 |
tatatataggatggtccagctggtatgcgatgtggttggggtgttgaaaatgtaccccttggtgctgctgcttgcatagaatacccataataatatggtg |
32729 |
T |
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| Q |
149 |
aacccattgttgaagatgatggtccataaagttgttgatagtattg |
194 |
Q |
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| T |
32730 |
aacccatagttgaagataatggtccataaagttgttgatattattg |
32775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 32532 - 32567
Alignment:
| Q |
9 |
agcagagaaagaagctccttccattggtgtagtagg |
44 |
Q |
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| T |
32532 |
agcagagaaagaacctccttccattggtgtagtagg |
32567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 21723992 - 21724137
Alignment:
| Q |
49 |
tatagataggatggtccagcttgtatgcgatgtggttggggtgttgaaaatgaaccccttggtgctgctgcttgcatagaatagccataataatatggtg |
148 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21723992 |
tatatataggatggtccagctggtatgcgatgtggttggggtgttgaaaatgtaccccttggtgctgctgcttgcatagaatacccataataatatggtg |
21724091 |
T |
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| Q |
149 |
aacccattgttgaagatgatggtccataaagttgttgatagtattg |
194 |
Q |
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| T |
21724092 |
aacccatagttgaagataatggtccataaagttgttgatattattg |
21724137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 44
Target Start/End: Original strand, 21723896 - 21723931
Alignment:
| Q |
9 |
agcagagaaagaagctccttccattggtgtagtagg |
44 |
Q |
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| T |
21723896 |
agcagagaaagaacctccttccattggtgtagtagg |
21723931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 13379130 - 13378960
Alignment:
| Q |
12 |
agagaaagaagctccttccattggtgtagtagggtagtatagataggatggtccagcttgtatgcgatgtggttggggtgttgaaaatgaaccccttggt |
111 |
Q |
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| T |
13379130 |
agagaaagaacctccttcc-ttggtgtagtaggataatatagataggatggtccagctggtatgcgatgtggttggggtgttgaaaatgcaccccttggt |
13379032 |
T |
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| Q |
112 |
gctgctgcttgcatagaatagccataataatatggtgaacccattgttgaagatgatggtccataaagttgttgatagtattg |
194 |
Q |
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| T |
13379031 |
gcggctgcttg-----------cataataatatggtgaacccttagttgaagatgatggtccataaagttgttgatattattg |
13378960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 107 - 194
Target Start/End: Original strand, 15116339 - 15116426
Alignment:
| Q |
107 |
ttggtgctgctgcttgcatagaatagccataataatatggtgaacccattgttgaagatgatggtccataaagttgttgatagtattg |
194 |
Q |
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| T |
15116339 |
ttggtgctgcttcttgtatggaacaccgataataatatggtgaacccacagttgaagatgatggtccataaagttgttgatagtattg |
15116426 |
T |
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