View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11411_high_13 (Length: 250)
Name: NF11411_high_13
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11411_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 29355461 - 29355681
Alignment:
| Q |
11 |
agaggatatcaccataatgatgagaatatgtgaaacatataatgtcatgaaaaatataaggttatcgttaaaaagaaaggcaaaatataatgtaatctct |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
29355461 |
agaggatatcaccataatgatgagaatatgtgaaacatataatgtcatgaaaaatataaggttatcgttaaaaagaaaggtaaaatataacgtaatctct |
29355560 |
T |
|
| Q |
111 |
taaagcatctcatgtggtgagtttgtatgaaactcgaacttggttccataaccactattaattggctcccacgataacacatgacacttatgtaactcaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
29355561 |
taaagcatctcatgtggtgagtttgtatgaaactcgaacttggttccataactactattaattggctcccactataacacatcacacttatgtaactcaa |
29355660 |
T |
|
| Q |
211 |
acatattttgcttcaatgata |
231 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
29355661 |
acatattttgcttcaatgata |
29355681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 231
Target Start/End: Original strand, 24579848 - 24579949
Alignment:
| Q |
130 |
agtttgtatgaaactcgaacttggttccataaccactattaattggctcccacgataacacatgacacttatgtaactcaaacatattttgcttcaatga |
229 |
Q |
| |
|
|||||| | |||| ||||||||| ||||| | ||| |||||| || ||||||| || ||||| ||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
24579848 |
agtttgcaagaaattcgaacttgattccacacccaatattaagtgactcccacaatgtcacattacacttatgcaactcaaacattttttgctccaatga |
24579947 |
T |
|
| Q |
230 |
ta |
231 |
Q |
| |
|
|| |
|
|
| T |
24579948 |
ta |
24579949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 208
Target Start/End: Complemental strand, 26772453 - 26772376
Alignment:
| Q |
131 |
gtttgtatgaaactcgaacttggttccataaccactattaattggctcccacgataacacatgacacttatgtaactc |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| ||||||||| || |||| ||||||||| ||||| |
|
|
| T |
26772453 |
gtttgtatgaaactcaaacttggttccataactactattaagcggctcccacaattctacatcacacttatgcaactc |
26772376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 231
Target Start/End: Complemental strand, 46769763 - 46769698
Alignment:
| Q |
166 |
tattaattggctcccacgataacacatgacacttatgtaactcaaacatattttgcttcaatgata |
231 |
Q |
| |
|
|||||| |||||||||| || || || ||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
46769763 |
tattaagtggctcccacaatgtcatatcacacttatgcaactcaaacatattttactccaatgata |
46769698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University