View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11411_high_18 (Length: 220)
Name: NF11411_high_18
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11411_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 29356039 - 29355855
Alignment:
| Q |
6 |
ataagggaccatgaaggtatgtacacgcctacattagctttgaaatttcttactttcctttttcccttttcagaccatcgtgtctgcttcaaaaattctg |
105 |
Q |
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| T |
29356039 |
ataagggaccatgaaggtatgtacacgcctacattagctttgaaatttctcactttcctttttaccttttcagaccatcgtgtctgcttcaaaaattctg |
29355940 |
T |
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| Q |
106 |
cctcacctatcttcatactatatttctcgatttcataaggtttgccaatnnnnnnntcattaagagtgtgagtttcataaaagtg |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
29355939 |
cctcacctatcttcatactatatttctcgatttcataaggtttgccaataaaaaaatcattaaaagtgtgagtttcataaaagtg |
29355855 |
T |
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