View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11411_high_3 (Length: 491)
Name: NF11411_high_3
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11411_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 415; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 25 - 479
Target Start/End: Complemental strand, 3564638 - 3564181
Alignment:
| Q |
25 |
gataccattcacagtcatttcactctcccttgtttcggtaaaaccattcatttcattcacttaatatgtacaaacttaggggnnnnnnngatgtaacgtg |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
3564638 |
gataccattcacagtcatttcactctcccttgtttcggtaaaaccattcatttcattcacttaatatgtacaaacttaggggaaaaaaagatgtaacatg |
3564539 |
T |
|
| Q |
125 |
ccatacgttttacaaaatataacacactaacaaattcaaacttcgatattcaagtcattcacttct---ttggtgtagttattgcttattttccgggggc |
221 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3564538 |
ccatgcgttttacaaaatataacacactaacaaattcaaacttcgatattcaagtcattcacttctcatttggtgtagttattgcttattttccgggggc |
3564439 |
T |
|
| Q |
222 |
aaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaatggcttgaacg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3564438 |
aaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaatggcttgaacg |
3564339 |
T |
|
| Q |
322 |
aaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggt |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3564338 |
aaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggt |
3564239 |
T |
|
| Q |
422 |
caaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaat |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3564238 |
caaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaat |
3564181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 32 - 479
Target Start/End: Complemental strand, 3570286 - 3569829
Alignment:
| Q |
32 |
ttcacagtcatttcactctcccttgtttcggtaaaaccattcatttcattcacttaatatgtacaaacttaggg----gnnnnnnngatgtaacgtgcca |
127 |
Q |
| |
|
|||||| ||||| | ||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||| | ||||||| | |||| |
|
|
| T |
3570286 |
ttcacattcattgctctctcccttgttttagtaaaaccattcatttcattcacataatttgtacaaacttaggaagaagaaaaaaagatgtaatgcgcca |
3570187 |
T |
|
| Q |
128 |
tacgttttacaaaatataacacactaacaaattcaaacttcgatattcaagtcattcacttctt------tggtgtagttattgcttattttccgggggc |
221 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||| || ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||| |
|
|
| T |
3570186 |
tacgtttttcaacatataacacaataacaaattcaaagtttgatattcaagtcattcactacttctcatttggtgtagttattgcttattttccaggggc |
3570087 |
T |
|
| Q |
222 |
aaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaatggcttgaacg |
321 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||| || |||||||| |||||| |
|
|
| T |
3570086 |
aaagtttgtggcataggcccaagcattgttgttaactggatcagcaaggtggtcagcgaggttctcaataggtccctttccggtgacaatggcctgaacg |
3569987 |
T |
|
| Q |
322 |
aaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggt |
421 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3569986 |
aagaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaaggggt |
3569887 |
T |
|
| Q |
422 |
caaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaat |
479 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||| || ||||||||||||||||| |
|
|
| T |
3569886 |
caaagctgccacctgggtagagtggatcgactacctcgcctagaggtccaccagcaat |
3569829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 192 - 479
Target Start/End: Complemental strand, 3573163 - 3572876
Alignment:
| Q |
192 |
tggtgtagttattgcttattttccgggggcaaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgata |
291 |
Q |
| |
|
|||||||||| | ||| | ||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| || || ||||| ||| |
|
|
| T |
3573163 |
tggtgtagttttggctcactttccaggggcaaagtttgtggcataggcccatgcattgttgttaactgggtcagcaaggtggtcagcaagattctctata |
3573064 |
T |
|
| Q |
292 |
ggtccctttccagtcacaatggcttgaacgaaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaag |
391 |
Q |
| |
|
||||| ||||| || ||||| |||||||| || ||||||||||| || |||||||||||||| |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
3573063 |
ggtccttttccggttacaatagcttgaacaaagaatccaaacatggaaaacatagctaaccttccatttttgagttctttcacctttaactctgcaaaag |
3572964 |
T |
|
| Q |
392 |
cctcgggatcttcggcaaggcccaaggggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaat |
479 |
Q |
| |
|
|||| || || || || ||||| || |||||||| || |||||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
3572963 |
cctctgggtcatcagctaggcctaatgggtcaaaactaccacctgggtagagtgggtcgacaacctcaccgagaggtccacctgcaat |
3572876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 211 - 479
Target Start/End: Original strand, 3584790 - 3585058
Alignment:
| Q |
211 |
tttccgggggcaaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaa |
310 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||| | |||||| || ||||| | | |||||||||||| ||||| | |
|
|
| T |
3584790 |
tttccggggacaaagtttgtggcgaaggcccaagcgttgttgttaactgggtcagcgatgtggtcagcaaggttttttaaaggtccctttccggtcacga |
3584889 |
T |
|
| Q |
311 |
tggcttgaacgaaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaag |
410 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||| ||||| |||||||||||||||||||| || || ||||| |
|
|
| T |
3584890 |
tggcttgaacaaagaatccaaacatagagaacatcgctaacctaccattcttgagttctttaacctttaactctgcaaaagcctcggggtcctcagcaag |
3584989 |
T |
|
| Q |
411 |
gcccaaggggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaat |
479 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||| ||||| |
|
|
| T |
3584990 |
gcccaatgggtcaaagcttccacctggatagagtgggtcgactacctcaccaagaggtccaccggcaat |
3585058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 198 - 479
Target Start/End: Complemental strand, 3576441 - 3576160
Alignment:
| Q |
198 |
agttattgcttattttccgggggcaaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccc |
297 |
Q |
| |
|
|||| ||||| | ||||||||| ||||||||||||| |||||||||| |||||||| || ||||||| | |||||||| |||||||| | ||||||| |
|
|
| T |
3576441 |
agtttttgctcactttccggggacaaagtttgtggcaaaggcccaagcgttgttgttgacggggtcagtgatatggtcggcaaggttctctagaggtccc |
3576342 |
T |
|
| Q |
298 |
tttccagtcacaatggcttgaacgaaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgg |
397 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||||| ||||||||||||||||| | |
|
|
| T |
3576341 |
tttccggttacaatggcctgaacgaagaatccaaacatagagaacatagctagcctaccattcttaagttctttcacctttaactctgcaaaagcctctg |
3576242 |
T |
|
| Q |
398 |
gatcttcggcaaggcccaaggggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaat |
479 |
Q |
| |
|
| || || || |||||||| ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||| |
|
|
| T |
3576241 |
ggtcgtcagcgaggcccaatgggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaat |
3576160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 221 - 479
Target Start/End: Complemental strand, 13276365 - 13276107
Alignment:
| Q |
221 |
caaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaatggcttgaac |
320 |
Q |
| |
|
|||||||||| || |||||||||| |||||||| |||||||| || |||||||| || ||||| || | |||||||||||| ||||||||||||||||| |
|
|
| T |
13276365 |
caaagtttgtagcaaaggcccaagcgttgttgttgaccgggtctgcgaggtggtcagcaaggttttccaaaggtccctttccggtcacaatggcttgaac |
13276266 |
T |
|
| Q |
321 |
gaaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggcccaagggg |
420 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||||||||| || | |||||||| ||||||||| ||||||| || || || ||||| || ||||| ||| |
|
|
| T |
13276265 |
gaagaatccaaacatagaaaacatggctaacctaccattcttaatctctttcactttcaactctacaaaagcttctgggtcatcggcgagacccaatggg |
13276166 |
T |
|
| Q |
421 |
tcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaat |
479 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
13276165 |
tcgaagctaccacctgggtagagtgggtcaatcacctcaccaagaggtccaccagcaat |
13276107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 211 - 471
Target Start/End: Complemental strand, 3578284 - 3578024
Alignment:
| Q |
211 |
tttccgggggcaaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaa |
310 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||| |||| || || ||||| | |||||| || |||||||| | ||||||||| | || |||| |
|
|
| T |
3578284 |
tttccgggaacaaagtttgtggcaaaggcccaagcgttgctgttgactggatcagcgatgtggtcagcaaggttctctagtggtcccttttcggttacaa |
3578185 |
T |
|
| Q |
311 |
tggcttgaacgaaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaag |
410 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| ||||| ||||||||||||||||| || || || || || |
|
|
| T |
3578184 |
tggcctgaacgaaaaatccaaacatcgagaacatagctaacctgccattcttgagttctttaacctttaactctgcaaaagcctctgggtcgtctgcgag |
3578085 |
T |
|
| Q |
411 |
gcccaaggggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtcca |
471 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||||| || || |||||||| ||||||||| |
|
|
| T |
3578084 |
gcccaatgggtcaaagcttccaccggggtagagtggatcgactacctcaccaagaggtcca |
3578024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 211 - 479
Target Start/End: Complemental strand, 38357464 - 38357196
Alignment:
| Q |
211 |
tttccgggggcaaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaa |
310 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||| || |||||||| || ||||| ||||| || ||||| |||||||| | |||||||||||| ||||||| |
|
|
| T |
38357464 |
tttccgggaacaaagttggtggcataggcccatgcgttgttgttgactgggtcggcaagatgatcggcaaggttctccaaaggtccctttccggtcacaa |
38357365 |
T |
|
| Q |
311 |
tggcttgaacgaaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaag |
410 |
Q |
| |
|
| || ||||| || ||||| |||||||||||||| ||||| ||||| || || ||||| || |||||||||||||| |||||||| || || || || || |
|
|
| T |
38357364 |
tagcctgaacaaagaatccgaacatagagaacatggctaatctaccgttcttgagttccttaaccttcaactctgcgaaagcctctgggtcgtcagctag |
38357265 |
T |
|
| Q |
411 |
gcccaaggggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaat |
479 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
38357264 |
gcccaatgggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaat |
38357196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 449
Target Start/End: Complemental strand, 42603259 - 42603023
Alignment:
| Q |
213 |
tccgggggcaaagtttgtggcgtaggcccaagcattgttgttaaccgggtcagcaaggtggtcggcgaggttctcgataggtccctttccagtcacaatg |
312 |
Q |
| |
|
||||||| | ||||| || ||||| ||||| || |||||| ||| |||||||||| |||||| ||||||| | || ||||| ||||| |||||| |
|
|
| T |
42603259 |
tccggggacgaagttagtagcgtatgcccatgcgttgttggcaacagggtcagcaacatggtcgtaaaggttctgaacggggcccttgccagtaacaatg |
42603160 |
T |
|
| Q |
313 |
gcttgaacgaaaaatccaaacatagagaacatagctaacctaccattttttagttctttcaccttcaactctgcaaaagcctcgggatcttcggcaaggc |
412 |
Q |
| |
|
|||||||| || || |||||||| ||||||||||| || | || || || ||||| || |||||||||||||| || || ||||| || || ||||| | |
|
|
| T |
42603159 |
gcttgaacaaagaaaccaaacatggagaacatagccaatcggccgttcttgagttccttgaccttcaactctgcgaatgcatcggggtcatcagcaagac |
42603060 |
T |
|
| Q |
413 |
ccaaggggtcaaagctgccacctgggtagagtgggtc |
449 |
Q |
| |
|
| | ||||||||| ||||| ||||| |||||||| |
|
|
| T |
42603059 |
caagagggtcaaaggcaccaccagggtaaagtgggtc |
42603023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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