View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11411_high_7 (Length: 359)

Name: NF11411_high_7
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11411_high_7
NF11411_high_7
[»] chr8 (2 HSPs)
chr8 (11-166)||(11531473-11531628)
chr8 (261-343)||(11531723-11531805)
[»] chr5 (2 HSPs)
chr5 (261-306)||(26300025-26300070)
chr5 (16-87)||(26299037-26299108)
[»] chr3 (4 HSPs)
chr3 (261-306)||(13614840-13614885)
chr3 (127-170)||(10978044-10978087)
chr3 (13-90)||(10980382-10980459)
chr3 (16-81)||(13614455-13614520)


Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 11531473 - 11531628
Alignment:
Q  11 cataggttggataaaaaatctgaaaaatgggtgcaaaatttttgtttgtgttgagcttactagtttgtattgcagaagcacaccgtcaaattcaaaacaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11531473 cataggttggataaaaaatctgaaaaatgggtgcaaaatttttgtttgtgttgagcttactagtttgtattgcagaagcacaccgtcaaattcaaaacaa 11531572  T
Q  111 gcttttcaatgtaatcaattatggtgcacgttctgatggaaataccgacaatagtg 166  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11531573 gcttttcaatgtgatcaattatggtgcacgttctgatggaaataccgacaatagtg 11531628  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 11531723 - 11531805
Alignment:
Q  261 cttatgaaggcatttttaaaagcatggagtgatgcatgcagatggagtggaaaaggaaaagcaactgttttcatcccacaagg 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11531723 cttatgaaggcatttttaaaagcatggagtgatgcatgcagatggagtggaaaaggaaaagcaactgttttgatcccacaagg 11531805  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 26300025 - 26300070
Alignment:
Q  261 cttatgaaggcatttttaaaagcatggagtgatgcatgcagatgga 306  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  26300025 cttatgaaggcatttttaaaagcatggagtgatgcatgcaaatgga 26300070  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 26299037 - 26299108
Alignment:
Q  16 gttggataaaaaatctgaaaaatgggtgcaaaatttttgtttgtgttgagcttactagtttgtattgcagaa 87  Q
    |||||||||| ||||||||||||||||| |||  |||||||| | |||| ||| ||||||||||||| ||||    
T  26299037 gttggataaataatctgaaaaatgggtgaaaatgttttgtttctcttgatcttgctagtttgtattgtagaa 26299108  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Original strand, 13614840 - 13614885
Alignment:
Q  261 cttatgaaggcatttttaaaagcatggagtgatgcatgcagatgga 306  Q
    |||||||||||||||||||||||| ||||| ||||||||| |||||    
T  13614840 cttatgaaggcatttttaaaagcagggagtaatgcatgcaaatgga 13614885  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 10978087 - 10978044
Alignment:
Q  127 aattatggtgcacgttctgatggaaataccgacaatagtgtggt 170  Q
    ||||||||||||||||||||| | |||||| |||||||||||||    
T  10978087 aattatggtgcacgttctgatagcaatacctacaatagtgtggt 10978044  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 10980459 - 10980382
Alignment:
Q  13 taggttggataaaaaatctgaaaaa-tgggtgcaaaatttttgtttgtgttgagcttactagtttgtattgcagaagca 90  Q
    |||||||||||||| |||||||||| || ||| ||  ||||||||||| |||||||||| | |||||||| ||||||||    
T  10980459 taggttggataaaatatctgaaaaaatgcgtgtaatttttttgtttgtcttgagcttaccaatttgtatt-cagaagca 10980382  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 13614455 - 13614520
Alignment:
Q  16 gttggataaaaaatctgaaaaatgggtgcaaaatttttgtttgtgttgagcttactagtttgtatt 81  Q
    |||||||||| ||||||||||||||||| |||  |||||||| | |||| ||| ||||||| ||||    
T  13614455 gttggataaataatctgaaaaatgggtggaaatgttttgtttctcttgatcttgctagtttatatt 13614520  T

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