View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11411_low_1 (Length: 793)
Name: NF11411_low_1
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11411_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 21 - 740
Target Start/End: Complemental strand, 13825638 - 13824918
Alignment:
| Q |
21 |
ataacaatgaccctctcttttagtaaattgttttgtattaattagcatagtgactagaaattgaccacttaacatgaataaatcggaaatttatggtttg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||||| ||||||||||||||||| |||||||| |
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| T |
13825638 |
ataacaatgaccctctcttttagtaaattgttttgtgttaattaacatagtgattagaaattcaccacttaacgtgaataaatcggaaattcatggtttg |
13825539 |
T |
|
| Q |
121 |
tagtacgtctcctgcatactgcaatatctttaaaatatgtaactgctgacattgcaatgttagctaggggaacaagttccttgcctagcaaacaatcacc |
220 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |
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| T |
13825538 |
tactacgtctcttgcatactgcaatatctttaaaatatgtaactgctgacattgcaatgttcgccaggggaacaagttccttgcctagcaaaccatcacc |
13825439 |
T |
|
| Q |
221 |
aaatgtaatttttatnnnnnnnnnnn-taataagtagatttgtttggcgaacatgtcctcgcctaacaaatttagcagaaaacaatgtttttcaattgta |
319 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
13825438 |
aaatgtaatttttatatataaaaaaaataataagtagatttgtttggcgaacatggcctcgcctaacaaatttagcagacaacaatgtttttcaatttta |
13825339 |
T |
|
| Q |
320 |
agtttattatcaatgcaaaactttaactccttccaaaacttaatctattgataagtacttaaaaactataatttgttgaaaacaaaagcaaggaataaaa |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
13825338 |
agtttattatcaatgcaaaactttaactccttccaaaacttaatctattgataagtacttaaaaactataaattgttcaaaacaaaagcaaggaataaaa |
13825239 |
T |
|
| Q |
420 |
atttggattgtctttcaataagcacttattttatgtcatcgacttgacatattctttgttaggatgaccaaaatgagaccgataacacaccatctttcgt |
519 |
Q |
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| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13825238 |
aattggattgtctttcaataagaacttattttatgtcatcgacttgacatattctttgttaggatgaccaaaatgagacagataacacaccatctttcgt |
13825139 |
T |
|
| Q |
520 |
tttcctttagtttgggaggagtttcatgaatttgtgatacatgtgatgtgaaacccatattctccccggtttcttatatattgttgaacaaggcacaaat |
619 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13825138 |
tttcctttagtttgggaggagttccatgaatttgtgatacatgtgatgtgaaacccatattctccccggtttcttatatattgttgaacaaggcacaaat |
13825039 |
T |
|
| Q |
620 |
ctcgcctatcactcgatcaacttccgtcacgttctcttccatccctgcttatgcaaataactcttctttgtcaaccaatccttcatattcttctctagaa |
719 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13825038 |
ctcgcctatcactcgatcaacttccgtcacgttctcttccgtccctacttatgcaaataactcttctttgtcaaccaatccttcatattcttctctagaa |
13824939 |
T |
|
| Q |
720 |
atcttcactgcttcttgataa |
740 |
Q |
| |
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||||||||||||||||||||| |
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| T |
13824938 |
atcttcactgcttcttgataa |
13824918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 4078407 - 4078338
Alignment:
| Q |
296 |
agaaaacaatgtttttcaattgtaagtttattatcaatgcaaaactttaactccttccaaaacttaatcta |
366 |
Q |
| |
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|||||||| ||||||||| | || || ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
4078407 |
agaaaacatagtttttcaacttcaatttcattgtcaatgcaaaactt-aactccttccaaaacttaatcta |
4078338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 4101160 - 4101091
Alignment:
| Q |
296 |
agaaaacaatgtttttcaattgtaagtttattatcaatgcaaaactttaactccttccaaaacttaatcta |
366 |
Q |
| |
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|||||||| ||||||||| | || || ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
4101160 |
agaaaacatagtttttcaacttcaatttcattgtcaatgcaaaactt-aactccttccaaaacttaatcta |
4101091 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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