View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11411_low_12 (Length: 333)
Name: NF11411_low_12
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11411_low_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 18315382 - 18315697
Alignment:
| Q |
18 |
acatcacaactacataacactggagaaatcaatccttgcacaggccgaaatatccattgagctcctacagccaaagtagtataacctgcctaaaatgcaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18315382 |
acatcacaactacataacactggagaaatcaatccttgcacaggccgaaatatccattgagctcctacagccaaagtagtataacctgcctaaaatggaa |
18315481 |
T |
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| Q |
118 |
aaaacaataagagaattatcacaccgtaacaatattcttaacgcaacaaacctatgtaggactggcacttcatattgaagatgtcagttatccaacaaag |
217 |
Q |
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| T |
18315482 |
aaaacaataagcaaattatcacaccgtaacaatattcttaacgcaacaaacttatgtaggactggcacttcatattgaagatgtcagttatccaacaaag |
18315581 |
T |
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| Q |
218 |
gcacctacaaaacaccgatacatgtggtttcatttaatcgcttttattttcttaaattattattgtctgcatgtgaatatcgggattcttaaattagcaa |
317 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18315582 |
acacctacataacaccaatacatgtggtttcatttaatcgcttttattttcttaaattattattgtctgcatgtgaatatcgggattcttaaattagcaa |
18315681 |
T |
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| Q |
318 |
atcatcacgcattcat |
333 |
Q |
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|||||||||||||||| |
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| T |
18315682 |
atcatcacgcattcat |
18315697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 18304769 - 18305030
Alignment:
| Q |
18 |
acatcacaactacataacactggagaaatcaatccttgcacaggccgaaatatccattgagctcctacagccaaagtagtataacctgcctaaaatgcaa |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18304769 |
acatcacatctacataacactggagaaatcaatccttgcacaggccgaaatatccattgagctcctacagccaaagtagtataacctgcctaaaattgaa |
18304868 |
T |
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| Q |
118 |
aaaacaataagagaattatcacaccgtaacaatattcttaacgcaacaaacctatgtaggactggcacttcatattgaagatgtcagttatccaacaaag |
217 |
Q |
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| T |
18304869 |
gaaacaataagcaaatcatcacactgtaacaatactcttaacgtaacaaacctatgtatcgtggacacttcatactgaaagtgtccgataccaggca--- |
18304965 |
T |
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| Q |
218 |
gcacctacaaaacaccgatacatgtggtttcatttaatcgcttttattttcttaaattattattg |
282 |
Q |
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| T |
18304966 |
gcacctacatgacaccgatacatgtcatttcatttaatcacttttattttcttaaattagtattg |
18305030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 3943800 - 3943758
Alignment:
| Q |
237 |
acatgtggtttcatttaatcgcttttattttcttaaattatta |
279 |
Q |
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| T |
3943800 |
acatgtggttacattcaatcacttttattttcttaaattatta |
3943758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Original strand, 37160688 - 37160721
Alignment:
| Q |
249 |
atttaatcgcttttattttcttaaattattattg |
282 |
Q |
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| T |
37160688 |
atttaatcacttttattttcttaaattattattg |
37160721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 40782503 - 40782471
Alignment:
| Q |
248 |
catttaatcgcttttattttcttaaattattat |
280 |
Q |
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| T |
40782503 |
catttaatcccttttattttcttaaattattat |
40782471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 17105320 - 17105268
Alignment:
| Q |
229 |
acaccgatacatgtggtttcatttaatcgcttttattttcttaaattattatt |
281 |
Q |
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||||||| | ||| |||| |||| |||| |||||||||||||||||||||||| |
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| T |
17105320 |
acaccgacaaatgaggttacattcaatcacttttattttcttaaattattatt |
17105268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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