View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11411_low_13 (Length: 317)
Name: NF11411_low_13
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11411_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 310
Target Start/End: Original strand, 49467456 - 49467748
Alignment:
| Q |
18 |
aatagtaagtgtcgatttgatctagaccaataaaatttactttacctttgttagtatcctgggcggacattattgctgtggctggagctgaagcagttga |
117 |
Q |
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| T |
49467456 |
aatagtaagtgttgatttgatctagaccaataaaatttactttacctttgttagtatcctgggcggacgttattgctgtggctggaactgaagcagttga |
49467555 |
T |
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| Q |
118 |
agtatgtggaggtcctactatcacagtttcgctcggcagacaagactcgccgtaagttgatgattgtctagtactctagtctgtatataggatatgacaa |
217 |
Q |
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| T |
49467556 |
agtatgtggaggtcctactatcacagtttcgctcggcagacaagactcgccgtaagttgatgattgtctagtactctagtctgtatataggatatgacaa |
49467655 |
T |
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| Q |
218 |
gcaaccgcgatcttttctcccaaggatgacaaacaacaagttattatatgttatttcaagatatcatctaacctacttttgagtgatgtccat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49467656 |
gcaaccgcgatcttttctcccaaggatgacaaacaacaagttattatatgttatttcaagatatcatctaacctacttttgagttatgtccat |
49467748 |
T |
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