View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11411_low_15 (Length: 262)
Name: NF11411_low_15
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11411_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 9315324 - 9315574
Alignment:
| Q |
1 |
tcagcatcgggatatgagagtataagctttagaatatcaatactcccataggaagcagccaccattaaaggggttcggtgctcaagaacaatttggttag |
100 |
Q |
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| T |
9315324 |
tcagcctcgggatatgagagtataagctttagaatatcaatactcccataggaagcagccaccattaaaggggttcggtgctcaagaacaatttggttag |
9315423 |
T |
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| Q |
101 |
atcccttttgacggacataccagaagccaacttcattaataagtgaagcatcactatctagagctaccttgaaatcttcaaaatcattgttagaagcatg |
200 |
Q |
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| T |
9315424 |
atcccttttgacggacataccagaagccaacttcattaataagtgaagcatcactatctagagctaccttgaaatcttcaaaatcattgttagaagcatg |
9315523 |
T |
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| Q |
201 |
ttcaagtaagctggaaaaagaatcatcggtacgaacagttagatttttcat |
251 |
Q |
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| T |
9315524 |
ttcaagtaagctggaaaaagaatcatcagtacgaacagttagatttttcat |
9315574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 11688916 - 11689153
Alignment:
| Q |
14 |
atgagagtataagctttagaatatcaatactcccataggaagcagccaccattaaaggggttcggtgctcaagaacaatttggttagatcccttttgacg |
113 |
Q |
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| T |
11688916 |
atgaaagtataagctttaaaatatcaatactcccacaggatgctgccaccatcaaagcggttctgtcctcaagaacaatttggttatgtccattttgacg |
11689015 |
T |
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| Q |
114 |
gacataccagaagccaacttcattaataagtgaagcatcactatctagagctaccttgaaatcttcaaaatcattgttagaagcatgttcaagtaagctg |
213 |
Q |
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| T |
11689016 |
gacacaccaggccccgacttcaagtaacagcgacgcatcactgtctaaagctatcttaaattgttcaaaatcattcttagaagcatgttcgagtaagctg |
11689115 |
T |
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| Q |
214 |
gaaaaagaatcatcggtacgaacagttagatttttcat |
251 |
Q |
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| T |
11689116 |
gacaaggaatcattcgtagtgacagttagatttttcat |
11689153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 45635451 - 45635411
Alignment:
| Q |
184 |
tcattgttagaagcatgttcaagtaagctggaaaaagaatc |
224 |
Q |
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| T |
45635451 |
tcattgttagaagcaagttccagtaaactggaaaaagaatc |
45635411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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