View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11411_low_19 (Length: 237)

Name: NF11411_low_19
Description: NF11411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11411_low_19
NF11411_low_19
[»] chr4 (5 HSPs)
chr4 (15-225)||(5706987-5707197)
chr4 (40-181)||(50935449-50935591)
chr4 (28-138)||(9238294-9238406)
chr4 (36-142)||(26905167-26905275)
chr4 (128-181)||(50911741-50911794)
[»] chr3 (2 HSPs)
chr3 (15-225)||(18641076-18641286)
chr3 (128-208)||(28920392-28920472)
[»] chr8 (3 HSPs)
chr8 (15-222)||(37786731-37786939)
chr8 (133-208)||(37186910-37186985)
chr8 (128-225)||(37791284-37791381)
[»] chr2 (7 HSPs)
chr2 (15-222)||(302156-302364)
chr2 (15-211)||(39190766-39190963)
chr2 (128-222)||(29960258-29960352)
chr2 (134-225)||(295654-295745)
chr2 (15-121)||(3461603-3461709)
chr2 (35-142)||(38099346-38099455)
chr2 (162-226)||(43081752-43081816)
[»] scaffold0038 (1 HSPs)
scaffold0038 (15-196)||(49140-49322)
[»] chr6 (2 HSPs)
chr6 (15-196)||(28248978-28249160)
chr6 (28-148)||(11186967-11187088)
[»] chr7 (5 HSPs)
chr7 (15-208)||(296891-297086)
chr7 (16-151)||(30380471-30380606)
chr7 (128-204)||(45937770-45937846)
chr7 (19-84)||(35898431-35898496)
chr7 (127-183)||(293111-293167)
[»] chr1 (2 HSPs)
chr1 (128-226)||(44541477-44541575)
chr1 (15-84)||(50778373-50778442)
[»] chr5 (2 HSPs)
chr5 (128-214)||(689961-690046)
chr5 (25-87)||(14233943-14234005)
[»] scaffold1064 (1 HSPs)
scaffold1064 (28-151)||(2256-2381)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 5706987 - 5707197
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagtta 114  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5706987 cacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaagaaattaagtgtatttaatattcagcagtta 5707086  T
Q  115 tgattaaggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5707087 tgattaaggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgca 5707186  T
Q  215 acttctgatgt 225  Q
    |||||||||||    
T  5707187 acttctgatgt 5707197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 50935449 - 50935591
Alignment:
Q  40 tttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagttatgattaa-ggggagtattggaatat 138  Q
    ||||||||||||||||||||||||| |||||| ||  |||| |||||| || |||| ||||||||||| ||||||||||||| |||||||||| ||||||    
T  50935449 tttacaaaagcagtgaagcttgacatatttgagttcctgagaaagaaagtaggtgtctttaatattcaacagttatgattaagggggagtattagaatat 50935548  T
Q  139 taatcaataattgttgttcagaatctgaagtgtagcttctgaa 181  Q
    |||||||||| |||||||||||| ||| |||| | ||||||||    
T  50935549 taatcaataactgttgttcagaagctggagtgcaacttctgaa 50935591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 138
Target Start/End: Complemental strand, 9238406 - 9238294
Alignment:
Q  28 cttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagttatg-attaagggg- 125  Q
    ||||| ||||||||||||||  |  |||||||||||| |||||||||||||||||| ||| |  ||||  | || |||||||||||||| |||||||||     
T  9238406 cttgcagatggctttacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttatgaattaagggga 9238307  T
Q  126 agtattggaatat 138  Q
    |||||| ||||||    
T  9238306 agtattagaatat 9238294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 26905167 - 26905275
Alignment:
Q  36 tggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagttatg-attaa-ggggagtattgg 133  Q
    |||||||||||| ||  |||||||||||| |||| ||||||| ||||||||| |  ||||  |||||||| |||||||||| ||||| |||||||||| |    
T  26905167 tggctttacaaaggctttgaagcttgacaaatttaaatttttaaggaagaaacttggtgttgttaatatttagcagttatgaattaatggggagtattag 26905266  T
Q  134 aatattaat 142  Q
     ||||||||    
T  26905267 tatattaat 26905275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 50911741 - 50911794
Alignment:
Q  128 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaa 181  Q
    |||| |||||||||||||||| |||||||||||| ||| |||| ||||||||||    
T  50911741 tattagaatattaatcaataactgttgttcagaagctggagtgcagcttctgaa 50911794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 225
Target Start/End: Complemental strand, 18641286 - 18641076
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagtta 114  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18641286 cacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaagaaattaagtgtatttaatattcagcagtta 18641187  T
Q  115 tgattaaggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18641186 tgattaaggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgca 18641087  T
Q  215 acttctgatgt 225  Q
    |||||||||||    
T  18641086 acttctgatgt 18641076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 208
Target Start/End: Complemental strand, 28920472 - 28920392
Alignment:
Q  128 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 208  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| ||| |||||||||||    
T  28920472 tattggaatattaatcaataattattgttcagaatctgaagtgcagcttctgaacatgagtttctaaagtgcagcttctga 28920392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 37786939 - 37786731
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagtta 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||    
T  37786939 cacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacagatttgaattcttgaggaataaattaggtgtttttaatattcagcagtta 37786840  T
Q  115 tgattaa-ggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgc 213  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |  ||||||||||| |    
T  37786839 tgattaagggggagtattggaatattaatcaataactgttgtttagaatctgaagtgcagcttctgaacatgagcttctgaagtgatgcttctgaagtac 37786740  T
Q  214 aacttctga 222  Q
    | |||||||    
T  37786739 agcttctga 37786731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 37186985 - 37186910
Alignment:
Q  133 gaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 208  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  37186985 gaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgcagcttctga 37186910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 225
Target Start/End: Complemental strand, 37791381 - 37791284
Alignment:
Q  128 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgcaacttctgatgt 225  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||||| || | |||||||||  | ||||||||||    
T  37791381 tattggaatattaatcaataactgttgttcagaatatgaagtgcaacttctgaacatgagcttctgaagtgctgtttctgaagtatagcttctgatgt 37791284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 302156 - 302364
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagtta 114  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||||| ||||||    
T  302156 cacaaaactacaacttgctgatggttttacaaaagcaatgaagcttgacagatttgaattcttgaggaagaaattaggtgtttttaatattcaacagtta 302255  T
Q  115 tgattaa-ggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgc 213  Q
    ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| |    
T  302256 tgattaagggggagtattggaatatgaatcaataactgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgaagtac 302355  T
Q  214 aacttctga 222  Q
    | |||||||    
T  302356 agcttctga 302364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 39190963 - 39190766
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagtta 114  Q
    ||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||||||    
T  39190963 cacagaactgcaacttgctgatggttttgcaaaagcagtgaagcttgacagatttgaattcttgaggaagaaattaggtgtttttaatatgcagcagtta 39190864  T
Q  115 tgattaa-ggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagt 211  Q
    ||||||| |||||||||| |||||||||||||||| ||||| ||||| ||| ||||| ||| |||| |||| ||  ||||||| ||||| ||||||||    
T  39190863 tgattaagggggagtattagaatattaatcaataactgttgctcagactcttaagtgcagcctctggacatcagactctgaagtgcagcgtctgaagt 39190766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 222
Target Start/End: Original strand, 29960258 - 29960352
Alignment:
Q  128 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgcaacttctga 222  Q
    ||||||||||||||||||||| ||||||| ||||| || |||| ||||||||||||||||||||||||| || |||||| |||||| ||||||||    
T  29960258 tattggaatattaatcaataactgttgtttagaatttggagtgcagcttctgaacatgagcttctgaagtgctgcttctaaagtgctacttctga 29960352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 295654 - 295745
Alignment:
Q  134 aatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgcaacttctgatgt 225  Q
    |||||||||| |||| ||||||| ||||| ||||||| |||||||||||||||||||||||||  |||| ||||||||| | ||||||||||    
T  295654 aatattaatcgataactgttgtttagaatttgaagtgcagcttctgaacatgagcttctgaagtacagcgtctgaagtgtagcttctgatgt 295745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 3461603 - 3461709
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagtta 114  Q
    ||||||||| |||||||||||||| |||||||| ||||| |||||||||| ||||||||| ||||| ||| || |  |||| ||| |||||  |||||||    
T  3461603 cacagaactgcaacttgctgatggttttacaaaggcagtaaagcttgacatatttgaattcttgagaaaggaacttggtgtttttgatattaggcagtta 3461702  T
Q  115 tgattaa 121  Q
    |||||||    
T  3461703 tgattaa 3461709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 38099455 - 38099346
Alignment:
Q  35 atggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagttatg-attaa-ggggagtattg 132  Q
    ||||||||||||| ||  ||||||||| || |||||||||||||||||||||| |  ||||  |||| |||||||| ||||| ||||| ||||||| ||     
T  38099455 atggctttacaaaggctttgaagcttggcatatttgaatttttgaggaagaaacttggtgttgttaacattcagcaattatgaattaagggggagtgtta 38099356  T
Q  133 gaatattaat 142  Q
    ||||||||||    
T  38099355 gaatattaat 38099346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 43081816 - 43081752
Alignment:
Q  162 tctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgcaacttctgatgtc 226  Q
    ||||||||| ||||||||||    ||||||||||| ||||||||||| ||||| |||||||||||    
T  43081816 tctgaagtgcagcttctgaagtacagcttctgaagtgcagcttctgatgtgcagcttctgatgtc 43081752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 49140 - 49322
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagtta 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||  ||||||||||| |||||    
T  49140 cacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaagaaattaggtgttcttaatattcagtagtta 49239  T
Q  115 tgattaa-ggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaag 196  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  49240 tgattaagggggagtattggagtattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaag 49322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 28248978 - 28249160
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagtta 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||  ||||||||||| |||||    
T  28248978 cacagaactacaacttgctgatggttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaagaaattaggtgttcttaatattcagtagtta 28249077  T
Q  115 tgattaa-ggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaag 196  Q
    ||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  28249078 tgattaagggggagtattggagtattaatcaataactgttgttcagaatctgaagtgcagcttcggaacatgagcttctgaag 28249160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 148
Target Start/End: Complemental strand, 11187088 - 11186967
Alignment:
Q  28 cttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagttatgattaa-gggga 126  Q
    ||||| ||||| ||||||||||||||||| ||| ||  |||||||||||||||||||||| || || | ||| || |||||||||||||||||| |||||    
T  11187088 cttgcagatggttttacaaaagcagtgaaacttcacgtatttgaatttttgaggaagaaactaggtatttttgatgttcagcagttatgattaaggggga 11186989  T
Q  127 gtattggaatattaatcaataa 148  Q
    ||||| |||| |||||||||||    
T  11186988 gtattagaatcttaatcaataa 11186967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 296891 - 297086
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtg-tatttaatattcagcagtt 113  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||||| ||| | |||||||||||||||||    
T  296891 cacagaactacaacttgttgatggttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagtt 296990  T
Q  114 atgattaa-ggggagtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctga 208  Q
    |||||||| |||||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||||||| | ||||||| | |||||||||||    
T  296991 atgattaagggggagtattagaatattaatcaataactgttgttcagcttctgaagtgtagcttctgaacatcaacttctgatgtgcagcttctga 297086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 30380471 - 30380606
Alignment:
Q  16 acagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagttat 115  Q
    |||||||| ||||||||  |||| ||||||||||||||||||||||||| |||| ||||||||||||| ||| |  |||| ||| || |||| |||||||    
T  30380471 acagaactgcaacttgcatatgg-tttacaaaagcagtgaagcttgacatattttaatttttgaggaaaaaacttggtgtttttgatgttcaacagttat 30380569  T
Q  116 gattaaggg-gagtattggaatattaatcaataattg 151  Q
    |||||||||  |||||| |||||||||||||||||||    
T  30380570 gattaagggaaagtattagaatattaatcaataattg 30380606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 45937770 - 45937846
Alignment:
Q  128 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagctt 204  Q
    |||| |||||||||||||||| |||||||||||||||| |||| | ||| ||||||||||||||||||| |||||||    
T  45937770 tattagaatattaatcaataactgttgttcagaatctggagtgcaacttttgaacatgagcttctgaagtgcagctt 45937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 35898431 - 35898496
Alignment:
Q  19 gaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaag 84  Q
    ||||| ||||||||| ||||||||| ||| ||||||||| |||||||||||||||| |||||||||    
T  35898431 gaactgcaacttgcttatggctttaaaaaggcagtgaagtttgacagatttgaattcttgaggaag 35898496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 293111 - 293167
Alignment:
Q  127 gtattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaaca 183  Q
    ||||| |||||||||||||||| ||||||||||  ||||||||| ||||||||||||    
T  293111 gtattagaatattaatcaataactgttgttcagcttctgaagtgcagcttctgaaca 293167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 44541575 - 44541477
Alignment:
Q  128 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgcaacttctgatgtc 226  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||| ||||| |||||| ||||    
T  44541575 tattggaatattaatcaataattgttgttcagaatctgaagtgcagcttctgaacatgagcttctgaagtgctgcttctgatgtgcagcttctgttgtc 44541477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 50778442 - 50778373
Alignment:
Q  15 cacagaactacaacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaag 84  Q
    ||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||    
T  50778442 cacagaactgcaacttgctgatggctttacaaaggcagtaaagcttgacagatttgaattttttaggaag 50778373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 689961 - 690046
Alignment:
Q  128 tattggaatattaatcaataattgttgttcagaatctgaagtgtagcttctgaacatgagcttctgaagcgcagcttctgaagtgca 214  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| || |||| |||||||||    
T  689961 tattggaatattaatcaataactgttgttcagaatctgaagtgcagcttc-gaacatgagcttctgaagtgctgcttttgaagtgca 690046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 14233943 - 14234005
Alignment:
Q  25 caacttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaa 87  Q
    |||||||| ||||| ||||| || ||||| || |||||||||||||||||||| |||||||||    
T  14233943 caacttgcagatggttttactaaggcagtaaaacttgacagatttgaattttttaggaagaaa 14234005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1064 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1064
Description:

Target: scaffold1064; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 151
Target Start/End: Complemental strand, 2381 - 2256
Alignment:
Q  28 cttgctgatggctttacaaaagcagtgaagcttgacagatttgaatttttgaggaagaaattaagtgtatttaatattcagcagttatg-attaa-gggg 125  Q
    ||||| ||||||||||||||  |  |||||||||| | |||| ||||||||||||| ||| |  ||||  | || ||| |||||||||| ||||| ||||    
T  2381 cttgcagatggctttacaaagactttgaagcttgaaatattttaatttttgaggaaaaaacttggtgttgtgaacattaagcagttatgaattaaggggg 2282  T
Q  126 agtattggaatattaatcaataattg 151  Q
    |||||| ||||||||||  |||||||    
T  2281 agtattagaatattaatacataattg 2256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University