View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_high_1 (Length: 778)
Name: NF11412_high_1
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 413 - 755
Target Start/End: Original strand, 2362423 - 2362762
Alignment:
| Q |
413 |
ctggacagctaatatcttgcaaggtggtgagaattaagaaatactagtagtagtagtactcaagtcggtgtggtgaagaacaaacaagtactgctgttat |
512 |
Q |
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| T |
2362423 |
ctggacagctaatatcttgcaaggtagtgagaattaagaaatactagt---agtagtactcaagtcggtgtggtgaagaacaaaccagtactgctgttat |
2362519 |
T |
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| Q |
513 |
atttttatactacataatggaacagacctgttctgaccattcaatgaatacggttaataaattactagagattaatatttttaattactcttatgagagg |
612 |
Q |
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| T |
2362520 |
atttttatactacataatggaacagacctgttctgaccattcaatgaatacggttaataaattactagagattaatatttttaattactcttatgagagg |
2362619 |
T |
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| Q |
613 |
ttcgagaaccgactgttttttagtcatactaatatttattttgttgtttgaattaaaattttgaagactaggaagaaagttagtagactgaatcattgta |
712 |
Q |
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| T |
2362620 |
ttcgagaaccgactgttttttagtcatactaatgtttattttgttgtttgaattaaaattttgaagactaggaagaaagttagtagactgaatcattgta |
2362719 |
T |
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| Q |
713 |
aaagtatctggtttacgtttgattttaacaagtgaacataaga |
755 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2362720 |
aaagaatctggtttacgtttgattttaacaagtgaacataaga |
2362762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 6 - 361
Target Start/End: Original strand, 2362016 - 2362371
Alignment:
| Q |
6 |
gaggagcagagaggggacagaaggtacgnnnnnnngtgagtgagacttgtgaactgtgtgggggcagataagaatgctttgaaattttaacgaaagttca |
105 |
Q |
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| T |
2362016 |
gaggagcagagaggggacagaaggtacgaaaaaaagtgagtgagacttgtgaactgtgtgggggcagataagaatgctttcaaattttaacgaaagttca |
2362115 |
T |
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| Q |
106 |
tgggtgaagaaaattttgaaaataaaacagtaacaaacgttgtttttaatgaataattgtgtctttttctnnnnnnnnnnnnnnccatgaattttttatg |
205 |
Q |
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| T |
2362116 |
tgggtgaagaaaattttgaaaataaaacagtaacaaacgttgtttttaatgaataattgtgtctttttctaaaaatgaaaaaaaccatgaattttttatg |
2362215 |
T |
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| Q |
206 |
tgctgtgctggggactcactgccacactactcagtcctttgcaccgtactagnnnnnnnnccctttgaatggctatgaaatggt--aaaaaataacggca |
303 |
Q |
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| T |
2362216 |
tgctgtgctggggactcactgc--cactactcagtcctttgcaccgtactagttttttttccctttgaatggctatgaaatggtaaaaaaaataacggca |
2362313 |
T |
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| Q |
304 |
atagtactgataagttcagggaattcactgagtgtagacagtgatgtactaactgggt |
361 |
Q |
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| T |
2362314 |
atagtactgataagttcagggaattcactgagtgtagacagtgatgtactaactgggt |
2362371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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