View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_high_10 (Length: 291)
Name: NF11412_high_10
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 51413632 - 51413356
Alignment:
| Q |
1 |
tttctccttttctgtctccctagacaaagttgtcatcttcacgcgcctcctttcattgccgcgacacaccttcatttgccggcgaccatcctccttggcc |
100 |
Q |
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| T |
51413632 |
tttctccttttctgtctccctagacaaagttgtcatcttcacgcgcctcctttcattgccgcgacacaccttcatttgccggcgaccatcctccttggcc |
51413533 |
T |
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| Q |
101 |
ggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacaactgaactgatactccaacggtgaaatgaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51413532 |
ggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacagctgaactgatactccaacggtgaaatgaaat |
51413433 |
T |
|
| Q |
201 |
acatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgttgttcaatgctttccctatg |
277 |
Q |
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| T |
51413432 |
acatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgctgttcaatgctttccctatg |
51413356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 99 - 277
Target Start/End: Complemental strand, 51418584 - 51418409
Alignment:
| Q |
99 |
ccggagacaaaagcttcctcctactactgctggcgccaccgcgagagagacgaggtggactgctactacaactgaactgatactccaacggtgaaatgaa |
198 |
Q |
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| T |
51418584 |
ccggagataatagcttcctcctactactgtttgcaccac---gagagagacgcggtggactgctgctacagctgaactgatactccaacggtgaaataaa |
51418488 |
T |
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| Q |
199 |
atacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgcttcaccatcacgttgttcaatgctttccctatg |
277 |
Q |
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| T |
51418487 |
atacatatcagcatcacgtggacggcacgtgagtgcttcatggtgcttcaccatcacgttgttcagtgctttccctatg |
51418409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 207
Target Start/End: Complemental strand, 51416582 - 51416472
Alignment:
| Q |
98 |
gccggagacaaaagcttcctcctactactgctggcgccac-cgcgagagagacgaggtggactgctactacaactgaactgatactccaacggtgaaatg |
196 |
Q |
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|||||||| || ||||| |||||||| ||||| || ||| | |||| |||| | |||||| |||| ||||| ||||||||||| ||||||||||||| | |
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| T |
51416582 |
gccggagataatagctttctcctactgctgcttgcaccatgcacgagtgagatgcggtggattgctgctacagctgaactgatattccaacggtgaaacg |
51416483 |
T |
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| Q |
197 |
aaatacatatc |
207 |
Q |
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||||||||||| |
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| T |
51416482 |
aaatacatatc |
51416472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 246
Target Start/End: Complemental strand, 29323760 - 29323690
Alignment:
| Q |
176 |
tgatactccaacggtgaaatgaaatacatatcagcatcacgtggtcggcacgtgagtgcttcatggtgctt |
246 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| |
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| T |
29323760 |
tgatactccaacggtgaaacgaaatacatatcagcatcacgtggacggcacatgagtgcttcgtggtgctt |
29323690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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