View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_high_16 (Length: 245)
Name: NF11412_high_16
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 36 - 225
Target Start/End: Original strand, 36374276 - 36374465
Alignment:
| Q |
36 |
atgtgaacatgattatcgattggatgaacaaattggaatatactgccgtacatgcggctttgtgaaaactgagatacgatacatttctgaacccattgta |
135 |
Q |
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| T |
36374276 |
atgtaaacatgattatcgattggatgaacaaattggaatatactgccgtacatgcggctttgtgaaaactgagatacgatacatttctgaacccattgta |
36374375 |
T |
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| Q |
136 |
agtcaagtaaaaacttaacaataacctatgcatgtttgatctcggaatgaatttgataaaatcacagtgcaccactgcgatttttcaaaa |
225 |
Q |
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| T |
36374376 |
agtcaagtaaaaacttatgaataatctatgcatgtttgaactcgcaatgaatttgataaaatcacagtgtgtcactgcgattttccaaaa |
36374465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 12069876 - 12069742
Alignment:
| Q |
17 |
agaaggaatccaacgaaatatgtgaacatgattatcgattggatgaacaaattggaatatactgccgtacatgcggctttgtgaaaactgagatacgata |
116 |
Q |
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| T |
12069876 |
agaaagaattcaaggaaatatgagaacatgattatcgattggatgaacaaattggaatatactgccatacatgcgactttgtgaaaactgagatacgata |
12069777 |
T |
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| Q |
117 |
catttctgaacccattgtaagtcaagtaaaaactt |
151 |
Q |
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| T |
12069776 |
catttatgaacccattgtaagtcaagtaaaaactt |
12069742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 32251270 - 32251159
Alignment:
| Q |
37 |
tgtgaacatgattatcgattggatgaacaaattggaatatactgccgtacatgcggctttgtgaaaactgagatacgatacatttctgaacccattgtaa |
136 |
Q |
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| T |
32251270 |
tgtgaacatgattatagattggatgaagaaattggaatatactgtcttcgatgtggatttgtgaaaactgcaatacgggacatttctgagccatttgtaa |
32251171 |
T |
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| Q |
137 |
gtcaagtaaaaa |
148 |
Q |
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| T |
32251170 |
gtcaagtaaaaa |
32251159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 38208178 - 38208308
Alignment:
| Q |
17 |
agaaggaatccaacgaaatatgtgaacatgattatcgattggatgaacaaattggaatatactgccgtacatgcggctttgtgaaaactgagatacgata |
116 |
Q |
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||||||||| ||| |||| ||||| ||| | ||| ||| |||||| |||||||||||||| || || |||||||||||||||||| ||| || || | |
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| T |
38208178 |
agaaggaattcaagtaaatttgtgagcataactataaattagatgaagaaattggaatataca-ccttagatgcggctttgtgaaaaccgaggtaggaga |
38208276 |
T |
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| Q |
117 |
catttctgaacccattgtaagtcaagtaaaaa |
148 |
Q |
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| T |
38208277 |
catttctgaaccctttgtaagttaagtaaaaa |
38208308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 141
Target Start/End: Complemental strand, 32228654 - 32228619
Alignment:
| Q |
106 |
gagatacgatacatttctgaacccattgtaagtcaa |
141 |
Q |
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| T |
32228654 |
gagatacgagacatttctgaacccattgtaagtcaa |
32228619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 8845641 - 8845552
Alignment:
| Q |
59 |
atgaacaaattggaatatactgccgtacatgcggctttgtgaaaactgagatacgatacatttctgaacccattgtaagtcaagtaaaaa |
148 |
Q |
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| T |
8845641 |
atgaagaaatcggaatattctgtcttagctgcggctctgtgaaaaccgagatacgagacatttctgaaccagttgtaagtcaagtaaaaa |
8845552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 8809724 - 8809654
Alignment:
| Q |
88 |
tgcggctttgtgaaaactgagatacgatacatttctgaacccattgtaagtcaagt--aaaaacttaacaa |
156 |
Q |
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| T |
8809724 |
tgcggctctgtgaataacgagatatgatacatttatgaacacattgtaagtcaagtgaaaaaacttaacaa |
8809654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 35960873 - 35960810
Alignment:
| Q |
37 |
tgtgaacatgattatcgattggatgaacaaattggaatatactgccgtacatgcggctttgtga |
100 |
Q |
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| T |
35960873 |
tgtgaacatgataatagattggatgaagaaattggaatatactgctgtatatgtggctttgtga |
35960810 |
T |
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