View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_high_18 (Length: 242)
Name: NF11412_high_18
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 1355438 - 1355679
Alignment:
| Q |
1 |
gaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctcttt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355438 |
gaaggaagtagtttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctcttt |
1355537 |
T |
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| Q |
101 |
acaagtatagggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355538 |
acaagtatagggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtgattt |
1355637 |
T |
|
| Q |
201 |
ttgttttgcaataaaaggttttattttagtttccttcatctc |
242 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1355638 |
ttgttttgcaataaaaggttttattttagtttccttcttctc |
1355679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 1362324 - 1362465
Alignment:
| Q |
1 |
gaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctcttt |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| |
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| T |
1362324 |
gaaggaagtagtttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattcataatcaatatattgatgatctcattgctgctcttt |
1362423 |
T |
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| Q |
101 |
acaagtatagggttccttccaattccaacaactaagtagact |
142 |
Q |
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| T |
1362424 |
acaagtataggaatccttccaattccaacaactaggtagact |
1362465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 11532287 - 11532409
Alignment:
| Q |
1 |
gaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctcttt |
100 |
Q |
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|||||||||| | ||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||||| ||||||| |
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| T |
11532287 |
gaaggaagtacgtacagaaacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaatacattgaagattttattgttgctcttc |
11532386 |
T |
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| Q |
101 |
acaagtatagggttccttccaat |
123 |
Q |
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| T |
11532387 |
aaaagtatagagttcattccaat |
11532409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 12846952 - 12847066
Alignment:
| Q |
1 |
gaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctcttt |
100 |
Q |
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||||||| || || ||||||||||||||||||| |||| ||| |||||||||||||||| ||||||| |||| ||||| || || |||||||||||| |
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| T |
12846952 |
gaaggaattatttacaggaacaatgcaaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttc |
12847051 |
T |
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| Q |
101 |
acaagtatagggttc |
115 |
Q |
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| T |
12847052 |
aaaagtatagggttc |
12847066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14589397 - 14589470
Alignment:
| Q |
1 |
gaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
74 |
Q |
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|||||||||| || |||||||||||| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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| T |
14589397 |
gaaggaagtatttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14589470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 14623055 - 14623128
Alignment:
| Q |
1 |
gaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
74 |
Q |
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|||||||||| || |||||||||||| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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| T |
14623055 |
gaaggaagtatttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14623128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 29955013 - 29955088
Alignment:
| Q |
40 |
aaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
115 |
Q |
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| T |
29955013 |
aaggttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctcttcaaaagtatagagttc |
29955088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 51369465 - 51369360
Alignment:
| Q |
15 |
caggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggtt |
114 |
Q |
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|||||| ||||| ||||| |||| || ||||||||||||||||| ||||||||||||| ||| | || || || ||||||||| | ||| |||| ||| |
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| T |
51369465 |
caggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatagagtt |
51369366 |
T |
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| Q |
115 |
ccttcc |
120 |
Q |
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| |||| |
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| T |
51369365 |
cattcc |
51369360 |
T |
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