View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_high_20 (Length: 240)
Name: NF11412_high_20
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 52075154 - 52075376
Alignment:
| Q |
18 |
tggacaaatggaagtggaagctagaagattccggtattttttcggtgagttcggcctataagaggttggtgggtgtggtgcttaatgaggagaggtggac |
117 |
Q |
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| T |
52075154 |
tggacagatggaagtggaagctagaagattccggtattttttcggtgagttcggcctataagaggttggtgggtgtggtgcttgatgaggagaggtggac |
52075253 |
T |
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| Q |
118 |
ggatgaggagaaggggtttttgagaagttgtggaagtgtccggctccgtcaaaggtggtggctttcgattggagagctattctcaaccggataccaacta |
217 |
Q |
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| T |
52075254 |
ggatgaggagaagaggtttttgagaagttgtggaagtgtccggctccgtcaaaggtggtggttttcggttggagagctattctcaaccggataccaacta |
52075353 |
T |
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| Q |
218 |
aaattaacctcacattgagacat |
240 |
Q |
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| T |
52075354 |
aaattaacctcacattgagacat |
52075376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 207
Target Start/End: Original strand, 49456322 - 49456504
Alignment:
| Q |
26 |
tggaagtggaagctagaagattccggtattttttcggtgagttcggcctataagaggttggtgggtgtggtgcttaatgaggagaggtggacggatgagg |
125 |
Q |
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| T |
49456322 |
tggaagtggaagttggaagattccagtgttttttcgatgaactcggcatacaagaggttagtgggtagtgtccttaatgaagtggcgtggagggaggatg |
49456421 |
T |
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| Q |
126 |
agaaggg-gtttttgagaagttgtggaagtgtccggctccgtcaaaggtggtggctttcgattggagagctattctcaaccgg |
207 |
Q |
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| T |
49456422 |
aaaagggtgttttcgagatgttgtggaagtctccggcaccgtcaaaggtggtggctttcgcttggagagcattcctcaaccgg |
49456504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 40386477 - 40386289
Alignment:
| Q |
19 |
ggacaaatggaagtggaagctagaagattccggtattttttcggtgagttcggcctataagaggttggtgggtgtggtgcttaatgaggagaggtggacg |
118 |
Q |
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| T |
40386477 |
ggacaaatggaggtggaagttggaagattccggaattttttcggtgagctcggcctataagaggttggaaggtagtatccttaatgaggtgggatggagg |
40386378 |
T |
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| Q |
119 |
gatgaggag-aaggggtttttgagaagttgtggaagtgtccggctccgtcaaaggtggtggctttcgattggagagctattctcaaccg |
206 |
Q |
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| T |
40386377 |
gttgaggagaaaggagttttcaagaggttgtggaagtgtccgtcgttttcaaaggtagtggcttttgcttggagagccattcttaaccg |
40386289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 7753057 - 7752989
Alignment:
| Q |
23 |
aaatggaagtggaagctagaagattccggtattttttcggtgagttcggcctataagaggttggtgggt |
91 |
Q |
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| T |
7753057 |
aaatggaggtggaagttagatgagtccggtatttttacggtgagctcggcctataagaggttggagggt |
7752989 |
T |
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