View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11412_high_21 (Length: 239)
Name: NF11412_high_21
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_21 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1355198 - 1354976
Alignment:
| Q |
1 |
taagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355198 |
taagctgaggtgcccatgtcttccaaacaattccgcgttctttcgtcctttcctcgaatccttcaggtaattcaagtgtaccctctttcagattcttcaa |
1355099 |
T |
|
| Q |
101 |
agtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaaca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1355098 |
agtccaaaagaaagacaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaaca |
1354999 |
T |
|
| Q |
201 |
acagaagatgattctcttgaatc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
1354998 |
acagaagatgattctcttgaatc |
1354976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1362084 - 1361862
Alignment:
| Q |
1 |
taagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1362084 |
taagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaa |
1361985 |
T |
|
| Q |
101 |
agtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaaca |
200 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1361984 |
agcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagttaaatcattctgactcaacttcaactcactcccaaatccaatgtaaaca |
1361885 |
T |
|
| Q |
201 |
acagaagatgattctcttgaatc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
1361884 |
acagaagatgattctcttgaatc |
1361862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 20492867 - 20492647
Alignment:
| Q |
3 |
agctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaag |
102 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||| |||||| |||||||| ||||||||||| ||||||||||||||||| ||||| || || ||||||| |
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|
| T |
20492867 |
agctgtggtgcccatgttttccaaacgattccatattcttttgttctttcttcaaatccttcgggtaattcaagtgtaccttctttaaggtttttcaaag |
20492768 |
T |
|
| Q |
103 |
tccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaac |
202 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||| ||| |||||||||| ||||| ||| | ||||| ||||| ||||| ||||||||||||||||| |
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|
| T |
20492767 |
cccaaaagaaaggtaacctagattgctcaattccatgagctaactcagttagatcttgttgatttaactttaactcgctcccgaatccaatgtaaacaac |
20492668 |
T |
|
| Q |
203 |
agaagatgattctcttgaatc |
223 |
Q |
| |
|
|||||||||||| ||||||| |
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|
| T |
20492667 |
cgaagatgattcttttgaatc |
20492647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29954734 - 29954512
Alignment:
| Q |
1 |
taagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaa |
100 |
Q |
| |
|
|||| |||||||||||||| |||||||| ||||| | |||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |
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|
| T |
29954734 |
taagttgaggtgcccatgttttccaaacgattccacattcttttgttctttcctcaaatcctttaggtaattcaagtgtaccctctttaagatttttcaa |
29954635 |
T |
|
| Q |
101 |
agtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaaca |
200 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||| || |||||||||| ||||| || || ||||||||||| ||||||||||||||||||||| |
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|
| T |
29954634 |
agcccaaaagaaaggcaacctagaaagctcaattccatgcgctaactcagttagatcttgttggcttaacttcaactcgctcccaaatccaatgtaaaca |
29954535 |
T |
|
| Q |
201 |
acagaagatgattctcttgaatc |
223 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
29954534 |
acagaagatgattcttttgaatc |
29954512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 220
Target Start/End: Original strand, 51369739 - 51369938
Alignment:
| Q |
21 |
ttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacc |
120 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| ||||||| |||||||||| | ||| ||||| ||| ||||||| |||||||||||| |||| |
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|
| T |
51369739 |
ttccaaacaattccacgttcttttgttctttcctcgaatccttgaggtaattcagatacaccgtctttacgatctttcaaagcccaaaagaaaggtaacc |
51369838 |
T |
|
| Q |
121 |
cagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttga |
220 |
Q |
| |
|
||||||| |||||||||| ||| |||||||||||||||| ||| ||||| |||| || ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
51369839 |
cagaaagttcaattccatgagctaactcagttaaatcttgttgatctaactttgactcgcttccaaatccaatgtaaacaacagaagatgattcttttga |
51369938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 11532039 - 11531825
Alignment:
| Q |
9 |
ggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaa |
108 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
11532039 |
ggtgcccatgttttccaaacaattccacgttcttttgttctttcctcaaattctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaa |
11531940 |
T |
|
| Q |
109 |
agaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaaga |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| |||||| ||| ||||| ||||| | ||| ||| ||||||||||||||||||||||||||||| |
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|
| T |
11531939 |
agaaaggcaacctagaaagctcaattccatgagctaactcaattagatcttgttgacttattttcgtctcgctcccaaatccaatgtaaacaacagaaga |
11531840 |
T |
|
| Q |
209 |
tgattctcttgaatc |
223 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
11531839 |
cgattcttttgaatc |
11531825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 14622807 - 14622593
Alignment:
| Q |
9 |
ggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaa |
108 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||||| ||||||||| |||| || |||| ||||| |
|
|
| T |
14622807 |
ggtgcccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaa |
14622708 |
T |
|
| Q |
109 |
agaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaaga |
208 |
Q |
| |
|
|||| || |||| ||||||||||||||||| ||| |||||||||| ||||| ||||| |||||| |||| |||||||||||||||||||||| |||||| |
|
|
| T |
14622707 |
agaacggtaacctagaaagctcaattccatgagctaactcagttatatcttgttgacttaacttcgactcgctcccaaatccaatgtaaacaatagaaga |
14622608 |
T |
|
| Q |
209 |
tgattctcttgaatc |
223 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
14622607 |
tgattcttttgaatc |
14622593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 12846712 - 12846490
Alignment:
| Q |
1 |
taagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaa |
100 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||| |||| || || ||||||| |||||| ||||||||||||| ||| || || ||||| |
|
|
| T |
12846712 |
taagctggggtgcccatgttttccaaacaattccacgttctttggttcgatcttcgaatcctttaggtaactcaagtgtacccttttttaggtttttcaa |
12846613 |
T |
|
| Q |
101 |
agtccaaaagaaaggcaacccagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaaca |
200 |
Q |
| |
|
|| |||||||||||| |||| ||||||||||||||||| ||| || || |||| ||||| || | ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
12846612 |
agcccaaaagaaaggtaacctagaaagctcaattccatgagctaattcggttagatctttttgcgttaacctcaactcgctcccaaatccaatgtaaaca |
12846513 |
T |
|
| Q |
201 |
acagaagatgattctcttgaatc |
223 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
12846512 |
acggaagatgattctcttgaatc |
12846490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 14589137 - 14588935
Alignment:
| Q |
21 |
ttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaaggcaacc |
120 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||||| ||||||||| |||| || |||| ||||||||| || |||| |
|
|
| T |
14589137 |
ttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctttaagatcttttaaagcccaaaagaacggtaacc |
14589038 |
T |
|
| Q |
121 |
cagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttga |
220 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||||| ||||| |||||| |||| |||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
14589037 |
tagaaagctcaattccatgagctaactcagttatatcttgttgacttaacttcgactcgctcccaaatccaatgtaaacaatagaagatgattcttttga |
14588938 |
T |
|
| Q |
221 |
atc |
223 |
Q |
| |
|
||| |
|
|
| T |
14588937 |
atc |
14588935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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