View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_high_22 (Length: 238)
Name: NF11412_high_22
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_22 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 14132308 - 14132524
Alignment:
| Q |
3 |
actgttatgagcagaaatttctgcctgcgggttcctcacagctggagagtagttgttagctaaatcattaatatataaatataaaattaggaatcgattt |
102 |
Q |
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| T |
14132308 |
actgttatgagcagaaatttctgcttgcgggttcctcacagctgggg-gtagttgttagctaaatcataaatatataaatataaaattaggaatcgattt |
14132406 |
T |
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| Q |
103 |
gatctcttagnnnnnnnnncacgattcagtataatcttttacaagaaataatattcaaattagccttccatttaaaaatgtcaagaactggttttatttt |
202 |
Q |
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| T |
14132407 |
gatctcttagtttttt---cacgattcagtataatcttttacaagaaataatattcaaattagccttccatttaaaaatgtcaagaactggttttatttt |
14132503 |
T |
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| Q |
203 |
atttttctagaggtaatttat |
223 |
Q |
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||||||||||||||||||||| |
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| T |
14132504 |
atttttctagaggtaatttat |
14132524 |
T |
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Target: scaffold0182 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 12245 - 12308
Alignment:
| Q |
1 |
gaactgttatgagcagaaatttctgcctgcgggttcctcacagctggagagtagttgttagcta |
64 |
Q |
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| T |
12245 |
gaactgttatgagtagaaatttttgcctgcgggttcctcacagctggggagtagttgttagcta |
12308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 267593 - 267629
Alignment:
| Q |
28 |
tgcgggttcctcacagctggagagtagttgttagcta |
64 |
Q |
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| T |
267593 |
tgcgggttcctcacagctggggagtagttgttagcta |
267629 |
T |
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