View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_high_25 (Length: 236)
Name: NF11412_high_25
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 42617974 - 42617752
Alignment:
| Q |
1 |
gtataaatttatgtataagtcatttttactattaaagagaagatgtggttaaactattctttttaaaagtaagctatattaacaaaagttgcccctcgnn |
100 |
Q |
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| T |
42617974 |
gtataaatttatgtataagtcatttttactattaaagagaacatgtggttaaactattctttttaaaagtaagctatattaacaaaagttgcccctcgaa |
42617875 |
T |
|
| Q |
101 |
nnnnnn-gttcataaaattaagtcgaaagttagtcgtatataagctatatattttcataaattctcttaaacattttacaaaagatagtaggagttcttt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42617874 |
aaaaaaagttcataaaattaagtcgaaagttagtcgtatataagctatatattttcataaattcttttaaacattttacaaaagatagtaggagttcttt |
42617775 |
T |
|
| Q |
200 |
taagctcgtcaacaggtcaaaga |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
42617774 |
taagctcgtcaacaggtcaaaga |
42617752 |
T |
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