View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_high_4 (Length: 365)
Name: NF11412_high_4
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 28939986 - 28940327
Alignment:
| Q |
18 |
ctcaccatcttttctcaaacctctctaatgagttaccttagcttctgaatttgtgtgtatatttatagagccttcagaagcaaagactatttggataaga |
117 |
Q |
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| T |
28939986 |
ctcaccatcttttctcaaacctctctaatgagttaccttagcttctgaatttgtgtgtatatttatagagccttcagaagcaaacactatttggataaga |
28940085 |
T |
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| Q |
118 |
acaaacttttgaggtaaaa-ccaaaagggtatggggtaaactaactgagagagatgtaagtatcttgaaaagatggtttctcatgcaagtttcagagaat |
216 |
Q |
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| T |
28940086 |
acaaacttttgaggtaaaaaccaaaagggtatggggtaaactaactgagagagatgtaagtatcttgaaaagatggtttctcatgcaagtttcagagaat |
28940185 |
T |
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| Q |
217 |
atgatggtgtgtgttttgttggcactatgtagcttaaatatgagtctaatgtgttttggaattcagtgagtgtgtcatatatgagaaacaaatttagctg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940186 |
atgatggtgtgtgttttgttggcactatgtagcttaaatatgagtctaatgtgttttggaattcagtgagtgtgtcatatatgagaaacaaatttagctg |
28940285 |
T |
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| Q |
317 |
gaaaagcacataagaatttctatatggcagagttggtctgtg |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940286 |
gaaaagcacataagaatttctatatggcagagttggtctgtg |
28940327 |
T |
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