View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_low_11 (Length: 287)
Name: NF11412_low_11
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_low_11 |
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| [»] scaffold0499 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 13100992 - 13101259
Alignment:
| Q |
1 |
atcggatctgatggggcctttaagcttatttcagaggcatggagtatactctccgataaggatagaagagcagcttatgatgagaagataaaagcaaaac |
100 |
Q |
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| T |
13100992 |
atcggatctgatggggcctttaagcttatttcataggcatggagtatactgtctgataaggatagaagagcagcttatgatgagaagataaaagcaaaac |
13101091 |
T |
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| Q |
101 |
cacataaaatgttcaaccatttttggtggttcatcgacaaaagcgacgacaaatggggcaaacaatagtaagaagaaaacaccttcaagtggaaagactc |
200 |
Q |
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| T |
13101092 |
cacagaaag-gttcaaccatttttggtggttcatcgacaaaagcgacgacaaataggacaaacaatagtaagaagaaaacaccttcaagtggaaagactc |
13101190 |
T |
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| Q |
201 |
ataagaatacggctaaagaacccacttcatcctttgtcaacacatcaaaatccacattctggactactt |
269 |
Q |
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| T |
13101191 |
ataagaatacggctaaagaacccacttcatcctttgtcaacacatcaaaatccacattctggactactt |
13101259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 3 - 269
Target Start/End: Complemental strand, 20549241 - 20548976
Alignment:
| Q |
3 |
cggatctgatggggcctttaagcttatttcagaggcatggagtatactctccgataaggatagaagagcagcttatgatgagaagataaaagcaaaacca |
102 |
Q |
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| T |
20549241 |
cggatccgatggggcgtttgggcttatttcagaggcatggagtatactgtccgataaggataaaagagcagcctatgatgcgaagataaaagcaaaacca |
20549142 |
T |
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| Q |
103 |
cataaaatgttcaaccatttttggtggttcatcgacaaaagcgacgacaaatggggcaaacaatagtaagaagaaaacaccttcaagtggaaagactcat |
202 |
Q |
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| T |
20549141 |
cagaaag-gttcaaccatttttggtggttcatcgacaaaagcgacggcaaacggggctaacaacagtaaaaagaaaacgccttcaagcggaaagagtcat |
20549043 |
T |
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| Q |
203 |
aagaatacggctaaagaacccacttcatcctttgtcaacacatcaaaatccacattctggactactt |
269 |
Q |
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| T |
20549042 |
aagaatatggctaaagaacccacttcatcctctgccaatgcatcaaaatccacattttggactactt |
20548976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 13141263 - 13141152
Alignment:
| Q |
75 |
ttatgatgagaagataaaagcaaaaccacataaaatgttcaaccatttttggtggttcatcgacaaaagcgacgacaaatggggcaaacaatagtaagaa |
174 |
Q |
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| T |
13141263 |
ttatgatgagaagataaaagcaaaaccacataaag-gttcaacaatttttggtggttcatcgacaaaagcgacggcaaatggggcaaacaatagtaagaa |
13141165 |
T |
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| Q |
175 |
gaaaacaccttca |
187 |
Q |
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| T |
13141164 |
aaaaacgccttca |
13141152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 69 - 269
Target Start/End: Complemental strand, 4111 - 3912
Alignment:
| Q |
69 |
agcagcttatgatgagaagataaaagcaaaaccacataaaatgttcaaccatttttggtggttcatcgacaaaagcgacgacaaatggggcaaacaatag |
168 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
4111 |
agcaacttatgatgagaagataaaagcaaaaccacagaaag-gttcaaccatttttggtggttcatcgacaaaagcgacggcaaatgggacaaacaatag |
4013 |
T |
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| Q |
169 |
taagaagaaaacaccttcaagtggaaagactcataagaatacggctaaagaacccacttcatcctttgtcaacacatcaaaatccacattctggactact |
268 |
Q |
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| T |
4012 |
taagaagaaaacaccttcaagtggaaagactcataagaatacggctaaagaacccacttcatcctttgtcaacacatcaaaatcatcattctggactact |
3913 |
T |
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