View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_low_20 (Length: 240)
Name: NF11412_low_20
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_low_20 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1043273 - 1043051
Alignment:
| Q |
18 |
cctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1043273 |
cctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggcgtgtttggatagccttgagcagtgtctgaaa |
1043174 |
T |
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| Q |
118 |
caccagtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1043173 |
caccagtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattct |
1043074 |
T |
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| Q |
218 |
tgttagtggtgccaaaacaactc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
1043073 |
tgttagtggtgccaaaacaactc |
1043051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1049367 - 1049145
Alignment:
| Q |
18 |
cctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaa |
117 |
Q |
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||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |
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| T |
1049367 |
cctttatcatgaaccgcatttacaataggtttccacgcctcaacatgctctttagtccatatacctggcgtgtttggatagccttgagcagtgtctgaga |
1049268 |
T |
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| Q |
118 |
caccagtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattct |
217 |
Q |
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| T |
1049267 |
caccagtagcttcagctatgagaaggcctcctttagaggttctctgagaataatactcgacagcaatggtttgaggaacattgttgtatgatctcattct |
1049168 |
T |
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| Q |
218 |
tgttagtggtgccaaaacaactc |
240 |
Q |
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|||||| |||||||||||||||| |
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| T |
1049167 |
tgttagcggtgccaaaacaactc |
1049145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 1032867 - 1032643
Alignment:
| Q |
16 |
cacctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctga |
115 |
Q |
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|||||||| ||||||| ||||| || ||||||||||||||||| || ||||||||||||||||| ||||| |||| |||||| |||||||||||||| || |
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| T |
1032867 |
cacctttggcatgaacagcatccacaataggtttccacgcctcgacatgctctttagtccatatacctggtgtgtctggatacccttgagcagtgtcaga |
1032768 |
T |
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| Q |
116 |
aacaccagtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcatt |
215 |
Q |
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||||| ||||||||||||||||||| ||||||||| || | |||||| || ||||| ||||||| ||||||||||| ||| |||||||| ||| |
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| T |
1032767 |
gacaccggtagcttcagctatgagaagaccacctttggatgctctctgtgagtaatagaggacagcatgaggttgaggaacgttgccatatgatcttatt |
1032668 |
T |
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| Q |
216 |
cttgttagtggtgccaaaacaactc |
240 |
Q |
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|| || ||||||||||||||||||| |
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| T |
1032667 |
ctagtgagtggtgccaaaacaactc |
1032643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 1052190 - 1051966
Alignment:
| Q |
16 |
cacctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctga |
115 |
Q |
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|||||||| ||||||| ||||| || ||||||||||||||||| || ||||||||||||||||| ||||| |||| |||||| |||||||||||||| || |
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| T |
1052190 |
cacctttggcatgaacagcatccacaataggtttccacgcctcgacatgctctttagtccatatacctggtgtgtctggatacccttgagcagtgtcaga |
1052091 |
T |
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| Q |
116 |
aacaccagtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcatt |
215 |
Q |
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||||| ||||||||||||||||||| ||||||||| || | |||||| || ||||| ||||||| ||||||||||| ||| |||||||| ||| |
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| T |
1052090 |
gacaccggtagcttcagctatgagaagaccacctttggatgctctctgtgagtaatagaggacagcatgaggttgaggaacgttgccatatgatcttatt |
1051991 |
T |
|
| Q |
216 |
cttgttagtggtgccaaaacaactc |
240 |
Q |
| |
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|| || ||||||||||||||||||| |
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| T |
1051990 |
ctagtgagtggtgccaaaacaactc |
1051966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 1070336 - 1070114
Alignment:
| Q |
18 |
cctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctgaaa |
117 |
Q |
| |
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|||||||||||||| ||||| || || |||||||| || || |||||||||||||||||||| || || |||||||||||||||||||| || || || | |
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| T |
1070336 |
cctttgtcatgaacagcatccacaatgggtttccatgcatcgacttgctctttagtccatataccaggcgtgtttggatagccttgagcggtatcagaga |
1070237 |
T |
|
| Q |
118 |
caccagtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacattgttgtatgatctcattct |
217 |
Q |
| |
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|||| |||||||| |||||||||| |||||||||||||| ||| ||||| || || || |||| ||||| ||||| ||| ||| |||||| ||| |
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| T |
1070236 |
caccggtagcttcggctatgagaagaccacctttagaggctctttgagagtagtagaggatagcatgaggttgtggaacgttgccgtaggatctctgtct |
1070137 |
T |
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| Q |
218 |
tgttagtggtgccaaaacaactc |
240 |
Q |
| |
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||| || |||||||||||||||| |
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| T |
1070136 |
tgtgagaggtgccaaaacaactc |
1070114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 1057998 - 1057860
Alignment:
| Q |
16 |
cacctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctga |
115 |
Q |
| |
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|||||||| |||| || ||||| || ||||||||||||||||| || |||||||||||||| || ||||| |||| |||||| |||||||| ||||| || |
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| T |
1057998 |
cacctttggcatggacagcatccacaataggtttccacgcctcgacgtgctctttagtccaaatacctggcgtgtctggatacccttgagcggtgtcaga |
1057899 |
T |
|
| Q |
116 |
aacaccagtagcttcagctatgagaataccacctttaga |
154 |
Q |
| |
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| ||| |||||||| | |||||||| ||| || ||||| |
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| T |
1057898 |
tataccggtagcttcggttatgagaagacctccgttaga |
1057860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 1065034 - 1064895
Alignment:
| Q |
16 |
cacctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttggatagccttgagcagtgtctga |
115 |
Q |
| |
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||||||| ||||||| ||||| || || |||||||| ||||| || |||||||||||||| || ||||| || | |||||| |||||||| ||||| || |
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| T |
1065034 |
cacctttagcatgaacagcatccacaatgggtttccatgcctcgacatgctctttagtccaaatacctggcgtatctggatacccttgagcggtgtcaga |
1064935 |
T |
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| Q |
116 |
aacaccagtagcttcagctatgagaataccacctttagag |
155 |
Q |
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||||| |||||||| | |||||||| ||| || |||||| |
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| T |
1064934 |
gacaccggtagcttcggttatgagaagacctccgttagag |
1064895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 1045957 - 1045880
Alignment:
| Q |
16 |
cacctttgtcatgaaccgcatctacgataggtttccacgcctcaacttgctctttagtccatattcctggagtgtttg |
93 |
Q |
| |
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|||||||| ||||||| ||||| ||||||||||||||||| || ||||||||||| |||||||| || || ||||||| |
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| T |
1045957 |
cacctttggcatgaacagcatccacgataggtttccacgcttcgacttgctcttttgtccatatgccaggtgtgtttg |
1045880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 1045791 - 1045679
Alignment:
| Q |
99 |
ccttgagcagtgtctgaaacaccagtagcttcagctatgagaataccacctttagaggttctctgagaataatacttgacagcaatgggttgaggaacat |
198 |
Q |
| |
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||||||||||| || || || || |||||||||| |||||||| |||||||| ||||| || ||||| ||||| ||||||| ||||||||| | |
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| T |
1045791 |
ccttgagcagtttcagagaccccggtagcttcagatatgagaagaccaccttcagaggccctttgagagtaatataggacagcatgctgttgaggaatgt |
1045692 |
T |
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| Q |
199 |
tgttgtatgatct |
211 |
Q |
| |
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||||||||||||| |
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|
| T |
1045691 |
tgttgtatgatct |
1045679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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