View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_low_25 (Length: 237)
Name: NF11412_low_25
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_low_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 52075740 - 52075656
Alignment:
| Q |
1 |
aggcaacaaaagacagcagcagcagaagctgcatagccccgaaaaaacagcaccccatcacctccgaggggaggttcgactaaga |
85 |
Q |
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| T |
52075740 |
aggcaacaaaagacagcagcagcagaagctgcatagccccgaaaaaacagcaccccatcacctccgaggggaggttctactaaga |
52075656 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 52075654 - 52075594
Alignment:
| Q |
179 |
tccaccatagaatccacctcaa--ttaaaatcattgaaaactttatcattcctagttttcc |
237 |
Q |
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| T |
52075654 |
tccaccatagaatccacctcaaaattaaaatcattgaaaactttatcattcctagttttcc |
52075594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 6164584 - 6164499
Alignment:
| Q |
114 |
aaaacaaacataccggaatgtgcattctatacataacccacttccaagccaaaactttcacctcctccaccatagaatccacctca |
199 |
Q |
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| T |
6164584 |
aaaacatacaaaccgggatgcgcattctacccaacacccacttccaagccatgactttcacctcttccacaatagcatccacctca |
6164499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 237
Target Start/End: Original strand, 26447044 - 26447158
Alignment:
| Q |
125 |
accggaatgtgcattctatacataacccacttccaagccaaaactttcacctcctccaccatagaatccacctc--aattaaaatcattgaaaactttat |
222 |
Q |
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| T |
26447044 |
accggaatacgcattctacacatcgcccacttccaagccaacactttcaccttttccacaatgacatccacctcaaaattagcatcattgaaaactttat |
26447143 |
T |
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| Q |
223 |
cattcctagttttcc |
237 |
Q |
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| T |
26447144 |
cattccgggttttcc |
26447158 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 368504 - 368425
Alignment:
| Q |
149 |
acccacttccaagccaaaactttcacctcctccaccatagaatccacctc--aattaaaatcattgaaaactttatcatt |
226 |
Q |
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| T |
368504 |
acccacctccaagccttgactttcacctcctccaccatagcatccacctcaaaattaacatcattaaaaaccttgtcatt |
368425 |
T |
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