View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11412_low_27 (Length: 228)
Name: NF11412_low_27
Description: NF11412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11412_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 9 - 217
Target Start/End: Original strand, 3939662 - 3939870
Alignment:
| Q |
9 |
agcacgattggggtgaaccatagactgtaccaaaatgtctttcttctcaattaaggacatgctcgcttataggttatgaaggcagcaagtgcgagcttct |
108 |
Q |
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| T |
3939662 |
agcacgattggggtgaaccacagactgtaccaaaatgtctttcttctcaattaaggacatgctcgcttataggttataaaggcagcaactgtgagcttct |
3939761 |
T |
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| Q |
109 |
gtttgctgagtacattttgaagaatgcaaaagtgctgcagaccatgaaaattagcacatcttcctcggctttacataagaagcaccaaatgctaatgaaa |
208 |
Q |
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| T |
3939762 |
gtttgctgagtatattttgaagaatgcaaaagtgcttcagaccatgaaaattagcacatcttcctcggttttacataagaagcaccatatgctaatgaaa |
3939861 |
T |
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| Q |
209 |
tcatctgtg |
217 |
Q |
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| T |
3939862 |
ttatctgtg |
3939870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 12652651 - 12652741
Alignment:
| Q |
65 |
acatgctcgcttataggttatgaaggcagcaagtgcgagcttctgtttgctgagtacattttgaagaatgcaaaagtgctgcagaccatga |
155 |
Q |
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| T |
12652651 |
acatgttcacttataggttataaaggtatgaagtccgagtttcagtttgcagagtacattttgaagaatgcaaaagtactccacaccatga |
12652741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 12486749 - 12486846
Alignment:
| Q |
38 |
ccaaaatgtctttcttctcaattaaggacatgctcgcttataggttatgaaggcagcaagtgcgagcttctgtttgctgagtacattttgaagaatgc |
135 |
Q |
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| T |
12486749 |
ccaaactgcctttcctctcaactaagaacatgctcgcttatatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgc |
12486846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 12508181 - 12508278
Alignment:
| Q |
38 |
ccaaaatgtctttcttctcaattaaggacatgctcgcttataggttatgaaggcagcaagtgcgagcttctgtttgctgagtacattttgaagaatgc |
135 |
Q |
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| T |
12508181 |
ccaaactgcctttcctctcaactaagaacatgctcgcttatatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgc |
12508278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 135
Target Start/End: Original strand, 12540909 - 12541006
Alignment:
| Q |
38 |
ccaaaatgtctttcttctcaattaaggacatgctcgcttataggttatgaaggcagcaagtgcgagcttctgtttgctgagtacattttgaagaatgc |
135 |
Q |
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| T |
12540909 |
ccaaactgcctttcctctcaactaagaacatgctcgcttatatattacaaaggcatgaagtgtgagcttcagtttgcagagtatgttttgaagaatgc |
12541006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 15329505 - 15329409
Alignment:
| Q |
65 |
acatgctcgcttataggttatgaaggcagcaagtgcgagcttctgtttgctgagtacattttgaagaatgcaaaagtgctgcagaccatgaaaatta |
161 |
Q |
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| T |
15329505 |
acatgctcgattataggttataaaggcatgaaatgtgagcttcagtttgtagagtatatattgaagaacgcaaaagtattgcacaccatgaaaatta |
15329409 |
T |
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